Variant report

Variant	rs1106185
Chromosome Location	chr2:10963570-10963571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1627163	0.89[ASN][1000 genomes]
rs1686497	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1734344	0.82[CEU][hapmap]
rs1734409	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1734435	0.82[CEU][hapmap]
rs1734436	0.82[CEU][hapmap]
rs1734444	0.85[GIH][hapmap]
rs17365477	0.95[CHB][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs1844387	0.80[ASN][1000 genomes]
rs2005011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2969887	0.84[CHB][hapmap];0.87[ASN][1000 genomes]
rs902130	0.81[TSI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1106185	C2orf50	cis	parietal	SCAN
rs1106185	ODC1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10953600-10968200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:10955400-10968600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:10961200-10972400	Weak transcription	Right Atrium	heart
4	chr2:10961400-10968600	Weak transcription	Gastric	stomach
5	chr2:10962000-10964600	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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