Variant report

Variant	rs2008967
Chromosome Location	chr2:10964293-10964294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1106185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1627163	0.89[ASN][1000 genomes]
rs1686497	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1734344	0.86[CEU][hapmap]
rs1734409	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1734435	0.82[CEU][hapmap]
rs1734436	0.82[CEU][hapmap]
rs17365477	0.94[CHB][hapmap];0.88[ASN][1000 genomes]
rs1844387	0.80[ASN][1000 genomes]
rs2005011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2969887	0.84[CHB][hapmap];0.87[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10953600-10968200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:10955400-10968600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:10961200-10972400	Weak transcription	Right Atrium	heart
4	chr2:10961400-10968600	Weak transcription	Gastric	stomach
5	chr2:10962000-10964600	Weak transcription	Stomach Mucosa	stomach
6	chr2:10963600-10971800	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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