Variant report

Variant	rs1734409
Chromosome Location	chr2:10956302-10956303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1106185	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1627163	0.92[ASN][1000 genomes]
rs1686497	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1844387	0.85[ASN][1000 genomes]
rs2005011	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2008967	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10953600-10957800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:10953600-10959200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:10953600-10960800	Weak transcription	Brain Substantia Nigra	brain
4	chr2:10953600-10960800	Weak transcription	Left Ventricle	heart
5	chr2:10953600-10968200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:10953800-10960800	Weak transcription	Spleen	Spleen
7	chr2:10955000-10956800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:10955000-10957000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:10955000-10960600	Weak transcription	Stomach Mucosa	stomach
10	chr2:10955200-10956800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:10955200-10957400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:10955200-10958600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:10955400-10958800	Weak transcription	HUVEC	blood vessel
14	chr2:10955400-10968600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:10955600-10960800	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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