Variant report

Variant	rs1734958
Chromosome Location	chr17:34336561-34336562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:179)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:179 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr17:34336500-34336650	AG04449	skin:	n/a	n/a
2	CTCF	chr17:34336480-34336630	HRPEpiC	eye:	n/a	n/a
3	CTCF	chr17:34336520-34336670	HFF	foreskin:	n/a	n/a
4	CTCF	chr17:34336463-34336647	SK-N-SH_RA	brain:	n/a	n/a
5	RAD21	chr17:34336382-34336689	GM12878	blood:	n/a	n/a
6	CTCF	chr17:34336480-34336630	HCFaa	heart:	n/a	n/a
7	CTCF	chr17:34336502-34336596	Pancreas_OC	pancreas:	n/a	n/a
8	CTCF	chr17:34336480-34336630	K562	blood:	n/a	n/a
9	RAD21	chr17:34336460-34336624	A549	lung:	n/a	n/a
10	CTCF	chr17:34336480-34336630	WI-38	lung:	n/a	n/a
11	CTCF	chr17:34336500-34336650	HBMEC	blood vessel:	n/a	n/a
12	CTCF	chr17:34336480-34336630	GM12866	blood:	n/a	n/a
13	CTCF	chr17:34336420-34336570	HCM	heart:	n/a	n/a
14	RAD21	chr17:34336343-34336751	H1-hESC	embryonic stem cell:	n/a	n/a
15	CTCF	chr17:34336155-34336638	HepG2	liver:	n/a	n/a
16	CTCF	chr17:34336480-34336630	GM12865	blood:	n/a	n/a
17	CTCF	chr17:34336480-34336630	HEEpiC	esophagus:	n/a	n/a
18	CTCF	chr17:34336440-34336590	SK-N-SH_RA	brain:	n/a	n/a
19	CTCF	chr17:34336500-34336650	RPTEC	kidney:	n/a	n/a
20	CTCF	chr17:34336460-34336610	AG04450	lung:	n/a	n/a
21	CTCF	chr17:34336424-34336692	HUVEC	blood vessel:	n/a	n/a
22	CTCF	chr17:34336460-34336610	AG10803	skin:	n/a	n/a
23	CTCF	chr17:34336500-34336650	HMEC	breast:	n/a	n/a
24	RAD21	chr17:34336084-34336716	HepG2	liver:	n/a	n/a
25	MYC	chr17:34336241-34336613	K562	blood:	n/a	n/a
26	RAD21	chr17:34336055-34336790	HepG2	liver:	n/a	n/a
27	CTCF	chr17:34336460-34336610	SK-N-SH_RA	brain:	n/a	n/a
28	CTCF	chr17:34336489-34336669	Gliobla	brain:	n/a	n/a
29	CTCF	chr17:34336487-34336654	GM19238	blood:	n/a	n/a
30	RAD21	chr17:34336447-34336587	K562	blood:	n/a	n/a
31	CTCF	chr17:34336480-34336638	A549	lung:	n/a	n/a
32	HCFC1	chr17:34336128-34336620	K562	blood:	n/a	n/a
33	CTCF	chr17:34336500-34336650	GM12872	blood:	n/a	n/a
34	MAX	chr17:34336115-34336617	K562	blood:	n/a	n/a
35	CTCF	chr17:34336460-34336610	AG09309	skin:	n/a	n/a
36	CTCF	chr17:34336500-34336650	A549	lung:	n/a	n/a
37	CTCF	chr17:34336460-34336610	HepG2	liver:	n/a	n/a
38	CTCF	chr17:34336500-34336650	AoAF	blood vessel:	n/a	n/a
39	CTCF	chr17:34336500-34336650	NB4	blood:	n/a	n/a
40	CTCF	chr17:34336500-34336594	LNCaP	prostate:	n/a	n/a
41	ZNF143	chr17:34336134-34336721	K562	blood:	n/a	n/a
42	RAD21	chr17:34336333-34336752	HCT-116	colon:	n/a	n/a
43	CTCF	chr17:34336481-34336650	GM13976	blood:	n/a	n/a
44	CTCF	chr17:34336463-34336660	A549	lung:	n/a	n/a
45	CTCF	chr17:34336459-34336685	HepG2	liver:	n/a	n/a
46	CTCF	chr17:34336539-34336623	Kidney_OC	kidney:	n/a	n/a
47	CTCF	chr17:34336500-34336650	HCM	heart:	n/a	n/a
48	CTCF	chr17:34336460-34336610	HMEC	breast:	n/a	n/a
49	CTCF	chr17:34336494-34336637	MCF-7	breast:	n/a	n/a
50	CTCF	chr17:34336299-34336669	A549	lung:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000267431	TF binding region
ENSG00000267566	TF binding region

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10468597	0.84[ASN][1000 genomes]
rs1608205	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1608206	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1624860	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1719194	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1719197	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1719198	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1719199	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1719200	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734954	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734955	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734957	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734959	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1734960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1734961	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2072667	0.85[ASN][1000 genomes]
rs2687497	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2702954	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41508645	0.86[EUR][1000 genomes]
rs61737011	0.85[ASN][1000 genomes]
rs7208990	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7209212	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7209448	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7213419	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7213890	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7214040	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7217257	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7221040	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7221769	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73990617	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73990618	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73992656	0.84[ASN][1000 genomes]
rs73992657	0.84[ASN][1000 genomes]
rs854624	0.88[EUR][1000 genomes]
rs854626	0.88[EUR][1000 genomes]
rs854628	0.88[EUR][1000 genomes]
rs862820	0.84[ASN][1000 genomes]
rs9303694	0.84[ASN][1000 genomes]
rs9303695	0.84[ASN][1000 genomes]
rs9303696	0.84[ASN][1000 genomes]
rs9747255	0.98[EUR][1000 genomes]
rs9748167	0.98[EUR][1000 genomes]
rs9908563	0.98[EUR][1000 genomes]
rs9914494	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9916758	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063100	chr17:34246253-34397598	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833424	chr17:34246253-34419476	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1056950	chr17:34246253-34442620	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1059795	chr17:34246253-34442620	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv1060457	chr17:34246253-34442620	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv543320	chr17:34246253-34442620	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv949160	chr17:34246253-34442620	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1062125	chr17:34266309-34442620	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv833427	chr17:34285285-34442620	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
10	esv1831753	chr17:34285285-34627742	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
11	esv1793798	chr17:34285285-34907282	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
12	esv1810659	chr17:34285285-34907282	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
13	esv1810804	chr17:34285285-34907282	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
14	esv1830012	chr17:34285285-34907282	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	esv1845538	chr17:34285285-34907282	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
16	esv1849179	chr17:34285285-34907282	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
17	esv2758450	chr17:34285285-34907282	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv428340	chr17:34285285-34907282	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
19	esv1829321	chr17:34285285-34921981	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
20	esv2758685	chr17:34285285-34921981	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv1058029	chr17:34285312-34365313	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
22	nsv543321	chr17:34285312-34365313	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
23	nsv1055760	chr17:34328461-34389926	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
24	nsv1059892	chr17:34330315-34442620	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34334800-34340800	ZNF genes & repeats	Fetal Intestine Small	intestine
2	chr17:34335400-34337200	Weak transcription	Liver	Liver
3	chr17:34335600-34336600	Enhancers	Primary B cells from peripheral blood	blood
4	chr17:34336200-34336600	Active TSS	K562	blood

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