Variant report

Variant	rs41508645
Chromosome Location	chr17:34329044-34329045
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:34)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:34 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr17:34328830-34329389	HepG2	liver:	n/a	n/a
2	POLR2A	chr17:34327535-34329495	HepG2	liver:	n/a	n/a
3	RCOR1	chr17:34329017-34329230	HepG2	liver:	n/a	n/a
4	FOXA2	chr17:34328949-34329396	HepG2	liver:	n/a	n/a
5	HNF4G	chr17:34328944-34329432	HepG2	liver:	n/a	chr17:34329165-34329180
6	HNF4A	chr17:34328953-34329278	HepG2	liver:	n/a	chr17:34329164-34329179
7	NRF1	chr17:34329033-34329388	HepG2	liver:	n/a	chr17:34329199-34329210
8	BHLHE40	chr17:34328950-34329391	HepG2	liver:	n/a	n/a
9	POLR2A	chr17:34328169-34329816	HepG2	liver:	n/a	n/a
10	ARID3A	chr17:34328959-34329418	HepG2	liver:	n/a	n/a
11	EP300	chr17:34328945-34329302	HepG2	liver:	n/a	n/a
12	RFX5	chr17:34329022-34329448	HepG2	liver:	n/a	n/a
13	TEAD4	chr17:34328884-34329592	HepG2	liver:	n/a	n/a
14	POLR2A	chr17:34327720-34329511	HepG2	liver:	n/a	n/a
15	POLR2A	chr17:34328926-34329422	HepG2	liver:	n/a	n/a
16	HNF4A	chr17:34328902-34329280	HepG2	liver:	n/a	chr17:34329164-34329179
17	TBP	chr17:34327766-34329406	HepG2	liver:	n/a	n/a
18	POLR2A	chr17:34329006-34329383	HepG2	liver:	n/a	n/a
19	MYBL2	chr17:34328707-34329528	HepG2	liver:	n/a	n/a
20	HEY1	chr17:34327518-34329441	HepG2	liver:	n/a	n/a
21	CEBPZ	chr17:34328873-34329414	HepG2	liver:	n/a	n/a
22	SMC3	chr17:34328982-34329336	HepG2	liver:	n/a	n/a
23	CEBPD	chr17:34329025-34329309	HepG2	liver:	n/a	n/a
24	POLR2A	chr17:34328911-34329463	HepG2	liver:	n/a	n/a
25	SP1	chr17:34328863-34329471	HepG2	liver:	n/a	n/a
26	REST	chr17:34328900-34329319	HepG2	liver:	n/a	n/a
27	BRCA1	chr17:34328982-34329177	HepG2	liver:	n/a	n/a
28	NRF1	chr17:34329018-34329330	K562	blood:	n/a	chr17:34329199-34329210
29	MAZ	chr17:34328974-34329379	HepG2	liver:	n/a	n/a
30	MXI1	chr17:34328988-34329444	HepG2	liver:	n/a	n/a
31	NFIC	chr17:34328806-34329322	HepG2	liver:	n/a	n/a
32	POLR2A	chr17:34328752-34329391	HepG2	liver:	n/a	n/a
33	NFIC	chr17:34328702-34329398	HepG2	liver:	n/a	n/a
34	HEY1	chr17:34328090-34329513	HepG2	liver:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCL15-1	chr17:34328456-34329084	NR_027921
2	lnc-CCL15-1	chr17:34328456-34329084	NR_027922

No data

Variant related genes	Relation type
CCL15	TF binding region
CCL15-CCL14	TF binding region

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1608205	0.86[EUR][1000 genomes]
rs1608206	0.86[EUR][1000 genomes]
rs1624860	0.86[EUR][1000 genomes]
rs1719194	0.86[EUR][1000 genomes]
rs1719197	0.86[EUR][1000 genomes]
rs1719198	0.86[EUR][1000 genomes]
rs1719199	0.86[EUR][1000 genomes]
rs1719200	0.86[EUR][1000 genomes]
rs1719201	0.81[EUR][1000 genomes]
rs1734954	0.86[EUR][1000 genomes]
rs1734955	0.86[EUR][1000 genomes]
rs1734957	0.84[EUR][1000 genomes]
rs1734958	0.86[EUR][1000 genomes]
rs1734959	0.86[EUR][1000 genomes]
rs1734960	0.86[EUR][1000 genomes]
rs1734961	0.86[EUR][1000 genomes]
rs1734963	0.85[ASN][1000 genomes]
rs1996855	0.81[ASN][1000 genomes]
rs2687497	0.86[EUR][1000 genomes]
rs2702954	0.84[EUR][1000 genomes]
rs56699936	0.85[ASN][1000 genomes]
rs7208990	0.88[EUR][1000 genomes]
rs7209212	0.88[EUR][1000 genomes]
rs7209448	0.88[EUR][1000 genomes]
rs7213419	0.88[EUR][1000 genomes]
rs7213890	0.88[EUR][1000 genomes]
rs7214040	0.88[EUR][1000 genomes]
rs7217257	0.88[EUR][1000 genomes]
rs7221040	0.88[EUR][1000 genomes]
rs7221769	0.88[EUR][1000 genomes]
rs73990617	0.88[EUR][1000 genomes]
rs73990618	0.88[EUR][1000 genomes]
rs854624	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs854625	1.00[ASN][1000 genomes]
rs854626	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs854628	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs854689	0.95[ASN][1000 genomes]
rs864976	0.82[ASN][1000 genomes]
rs9747255	0.88[EUR][1000 genomes]
rs9748167	0.88[EUR][1000 genomes]
rs9908563	0.88[EUR][1000 genomes]
rs9914494	0.88[EUR][1000 genomes]
rs9916758	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063100	chr17:34246253-34397598	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833424	chr17:34246253-34419476	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1056950	chr17:34246253-34442620	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1059795	chr17:34246253-34442620	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv1060457	chr17:34246253-34442620	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv543320	chr17:34246253-34442620	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv949160	chr17:34246253-34442620	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1062125	chr17:34266309-34442620	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv833427	chr17:34285285-34442620	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
10	esv1831753	chr17:34285285-34627742	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
11	esv1793798	chr17:34285285-34907282	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
12	esv1810659	chr17:34285285-34907282	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
13	esv1810804	chr17:34285285-34907282	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
14	esv1830012	chr17:34285285-34907282	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	esv1845538	chr17:34285285-34907282	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
16	esv1849179	chr17:34285285-34907282	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
17	esv2758450	chr17:34285285-34907282	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv428340	chr17:34285285-34907282	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
19	esv1829321	chr17:34285285-34921981	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
20	esv2758685	chr17:34285285-34921981	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv1058029	chr17:34285312-34365313	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
22	nsv543321	chr17:34285312-34365313	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
23	nsv1055760	chr17:34328461-34389926	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34327200-34329200	Active TSS	Fetal Intestine Small	intestine
2	chr17:34327200-34329600	Active TSS	Colonic Mucosa	Colon
3	chr17:34327800-34329200	Active TSS	Duodenum Mucosa	Duodenum
4	chr17:34327800-34332200	Enhancers	GM12878-XiMat	blood
5	chr17:34328000-34329600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:34328000-34331000	Weak transcription	Small Intestine	intestine
7	chr17:34328400-34329600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr17:34328400-34329600	Flanking Active TSS	Liver	Liver
9	chr17:34328400-34329800	Enhancers	Pancreas	Pancrea
10	chr17:34328400-34330000	Enhancers	Spleen	Spleen
11	chr17:34328600-34329200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr17:34328600-34330000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr17:34328800-34329200	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr17:34328800-34329200	Flanking Active TSS	Fetal Intestine Large	intestine
15	chr17:34328800-34329200	Flanking Active TSS	Stomach Mucosa	stomach
16	chr17:34329000-34329200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr17:34329000-34329200	Enhancers	Adipose Nuclei	Adipose
18	chr17:34329000-34329200	Active TSS	Rectal Mucosa Donor 31	rectum
19	chr17:34329000-34329200	Flanking Bivalent TSS/Enh	HepG2	liver
20	chr17:34329000-34329400	Enhancers	Colon Smooth Muscle	Colon
21	chr17:34329000-34329400	Enhancers	Fetal Kidney	kidney
22	chr17:34329000-34329600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
23	chr17:34329000-34329800	Enhancers	Lung	lung

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