Variant report

Variant	rs854625
Chromosome Location	chr17:34328461-34328462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:34327535-34329495	HepG2	liver:	n/a	n/a
2	HNF4A	chr17:34328107-34328469	HepG2	liver:	n/a	chr17:34328294-34328308
3	TEAD4	chr17:34327663-34328520	HepG2	liver:	n/a	n/a
4	POLR2A	chr17:34328169-34329816	HepG2	liver:	n/a	n/a
5	EP300	chr17:34327677-34328585	HepG2	liver:	n/a	n/a
6	RAD21	chr17:34327822-34328487	HepG2	liver:	n/a	n/a
7	FOXA1	chr17:34328146-34328526	HepG2	liver:	n/a	n/a
8	FOXA1	chr17:34327637-34328526	HepG2	liver:	n/a	n/a
9	CTCF	chr17:34328340-34328490	HepG2	liver:	n/a	n/a
10	POLR2A	chr17:34327720-34329511	HepG2	liver:	n/a	n/a
11	EP300	chr17:34327772-34328478	HepG2	liver:	n/a	n/a
12	POLR2A	chr17:34328203-34328657	HepG2	liver:	n/a	n/a
13	NR2F2	chr17:34327574-34328607	HepG2	liver:	n/a	n/a
14	REST	chr17:34328203-34328544	HepG2	liver:	n/a	n/a
15	TBP	chr17:34327766-34329406	HepG2	liver:	n/a	n/a
16	FOXA1	chr17:34327642-34328530	HepG2	liver:	n/a	n/a
17	MYC	chr17:34328364-34328506	HepG2	liver:	n/a	chr17:34328411-34328420
18	NR2F2	chr17:34327629-34328478	HepG2	liver:	n/a	n/a
19	POLR2A	chr17:34328181-34328572	HepG2	liver:	n/a	n/a
20	HEY1	chr17:34327518-34329441	HepG2	liver:	n/a	n/a
21	MYBL2	chr17:34327586-34328615	HepG2	liver:	n/a	n/a
22	NFIC	chr17:34327618-34328532	HepG2	liver:	n/a	n/a
23	JUND	chr17:34328179-34328575	HepG2	liver:	n/a	n/a
24	SIN3AK20	chr17:34328252-34328592	HepG2	liver:	n/a	n/a
25	POLR2A	chr17:34328315-34328605	HepG2	liver:	n/a	n/a
26	FOSL2	chr17:34327771-34328500	HepG2	liver:	n/a	chr17:34328052-34328061
27	FOXA1	chr17:34327628-34328586	HepG2	liver:	n/a	n/a
28	HNF4A	chr17:34328125-34328525	HepG2	liver:	n/a	chr17:34328294-34328308
29	SP1	chr17:34328115-34328579	HepG2	liver:	n/a	n/a
30	HEY1	chr17:34328090-34329513	HepG2	liver:	n/a	n/a
31	POLR2A	chr17:34327606-34328520	HepG2	liver:	n/a	n/a
32	HNF4G	chr17:34328142-34328534	HepG2	liver:	n/a	chr17:34328294-34328308 chr17:34328292-34328307
33	CTCF	chr17:34328455-34328569	HepG2	liver:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCL18-5	chr17:34328458-34328656	ENSG00000267566.1
2	lnc-CCL15-1	chr17:34328456-34329084	NR_027921
3	lnc-CCL15-1	chr17:34328456-34329084	NR_027922

Variant related genes	Relation type
CCL15	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1734963	0.85[ASN][1000 genomes]
rs1996855	0.81[ASN][1000 genomes]
rs41508645	1.00[ASN][1000 genomes]
rs56699936	0.85[ASN][1000 genomes]
rs854624	0.95[ASN][1000 genomes]
rs854626	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs854628	0.98[ASN][1000 genomes]
rs854689	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs864976	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063100	chr17:34246253-34397598	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833424	chr17:34246253-34419476	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1056950	chr17:34246253-34442620	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1059795	chr17:34246253-34442620	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv1060457	chr17:34246253-34442620	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv543320	chr17:34246253-34442620	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv949160	chr17:34246253-34442620	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1062125	chr17:34266309-34442620	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv833427	chr17:34285285-34442620	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
10	esv1831753	chr17:34285285-34627742	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
11	esv1793798	chr17:34285285-34907282	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
12	esv1810659	chr17:34285285-34907282	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
13	esv1810804	chr17:34285285-34907282	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
14	esv1830012	chr17:34285285-34907282	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	esv1845538	chr17:34285285-34907282	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
16	esv1849179	chr17:34285285-34907282	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
17	esv2758450	chr17:34285285-34907282	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv428340	chr17:34285285-34907282	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
19	esv1829321	chr17:34285285-34921981	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
20	esv2758685	chr17:34285285-34921981	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv1058029	chr17:34285312-34365313	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
22	nsv543321	chr17:34285312-34365313	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
23	nsv1055760	chr17:34328461-34389926	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34327200-34329200	Active TSS	Fetal Intestine Small	intestine
2	chr17:34327200-34329600	Active TSS	Colonic Mucosa	Colon
3	chr17:34327400-34328800	Active TSS	Fetal Intestine Large	intestine
4	chr17:34327400-34328800	Active TSS	Rectal Mucosa Donor 31	rectum
5	chr17:34327400-34329000	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr17:34327600-34329000	Active TSS	Rectal Smooth Muscle	rectum
7	chr17:34327800-34329200	Active TSS	Duodenum Mucosa	Duodenum
8	chr17:34327800-34332200	Enhancers	GM12878-XiMat	blood
9	chr17:34328000-34328600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
10	chr17:34328000-34329000	Bivalent/Poised TSS	HepG2	liver
11	chr17:34328000-34329600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr17:34328000-34331000	Weak transcription	Small Intestine	intestine
13	chr17:34328200-34328800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr17:34328200-34328800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr17:34328200-34328800	Enhancers	Stomach Mucosa	stomach
16	chr17:34328400-34328600	Enhancers	Gastric	stomach
17	chr17:34328400-34329600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr17:34328400-34329600	Flanking Active TSS	Liver	Liver
19	chr17:34328400-34329800	Enhancers	Pancreas	Pancrea
20	chr17:34328400-34330000	Enhancers	Spleen	Spleen

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