Variant report

Variant	rs173526
Chromosome Location	chr16:75460202-75460203
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:75458864..75460585-chr16:75466809..75469147,2	MCF-7	breast:
2	chr16:75457127..75459090-chr16:75459202..75462146,2	MCF-7	breast:
3	chr16:75456561..75460930-chr16:75465550..75468879,6	K562	blood:
4	chr16:75457350..75460465-chr16:75464646..75467985,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153774	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11149819	0.84[EUR][1000 genomes]
rs166012	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs247440	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs247446	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs37603	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs42471	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7192981	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv1065995	chr16:75373756-75626027	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	nsv1063718	chr16:75395969-75608071	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
5	esv2758432	chr16:75419614-75576971	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	esv2758657	chr16:75419614-75576971	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
7	nsv1062023	chr16:75427013-75461626	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75427200-75464400	Weak transcription	Esophagus	oesophagus
2	chr16:75427200-75465400	Weak transcription	Spleen	Spleen
3	chr16:75432400-75465400	Weak transcription	Pancreas	Pancrea
4	chr16:75432400-75466600	Weak transcription	Aorta	Aorta
5	chr16:75444000-75464400	Weak transcription	Hela-S3	cervix
6	chr16:75445200-75465000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:75446200-75465200	Weak transcription	Lung	lung
8	chr16:75446600-75464600	Weak transcription	Brain Germinal Matrix	brain
9	chr16:75446600-75465400	Weak transcription	Small Intestine	intestine
10	chr16:75446600-75466400	Weak transcription	Brain Angular Gyrus	brain
11	chr16:75446600-75466400	Weak transcription	Right Ventricle	heart
12	chr16:75446800-75466000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr16:75446800-75466400	Weak transcription	Fetal Brain Female	brain
14	chr16:75446800-75466400	Weak transcription	HSMM	muscle
15	chr16:75447000-75466400	Weak transcription	Liver	Liver
16	chr16:75450800-75465000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr16:75453600-75466400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr16:75453800-75466400	Weak transcription	Psoas Muscle	Psoas
19	chr16:75453800-75466600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr16:75455200-75463800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr16:75455200-75465000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr16:75455200-75465400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr16:75455200-75465400	Weak transcription	Right Atrium	heart
24	chr16:75455200-75466000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr16:75455400-75460400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr16:75455400-75465400	Weak transcription	Fetal Thymus	thymus
27	chr16:75455600-75465000	Weak transcription	Primary T cells from cord blood	blood
28	chr16:75455600-75465000	Weak transcription	Brain Hippocampus Middle	brain
29	chr16:75455600-75466400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr16:75455600-75466400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr16:75455600-75466400	Weak transcription	Primary B cells from cord blood	blood
32	chr16:75455600-75466400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr16:75455600-75466400	Weak transcription	NH-A	brain
34	chr16:75455800-75460400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr16:75455800-75461200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr16:75455800-75461200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr16:75455800-75461600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr16:75455800-75462800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr16:75455800-75463800	Weak transcription	Dnd41	blood
40	chr16:75455800-75464200	Weak transcription	Fetal Stomach	stomach
41	chr16:75455800-75464400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr16:75455800-75464400	Weak transcription	Fetal Muscle Leg	muscle
43	chr16:75455800-75464600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr16:75455800-75464800	Weak transcription	GM12878-XiMat	blood
45	chr16:75455800-75465000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr16:75455800-75465000	Weak transcription	Left Ventricle	heart
47	chr16:75455800-75465400	Weak transcription	Brain Anterior Caudate	brain
48	chr16:75455800-75465600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr16:75455800-75465600	Weak transcription	Thymus	Thymus
50	chr16:75455800-75466000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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