Variant report

Variant	rs7192981
Chromosome Location	chr16:75339131-75339132
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:75298469..75301995-chr16:75337781..75340827,6	MCF-7	breast:
2	chr16:75282402..75286042-chr16:75337577..75341093,9	MCF-7	breast:
3	chr16:75288586..75292639-chr16:75337750..75340619,6	MCF-7	breast:
4	chr16:75282912..75287259-chr16:75337955..75341068,4	MCF-7	breast:
5	chr16:75338370..75340171-chr16:75414434..75416006,2	MCF-7	breast:
6	chr16:75298649..75302173-chr16:75337597..75342572,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000050820	Chromatin interaction
ENSG00000261783	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11149819	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs166012	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs173526	0.87[EUR][1000 genomes]
rs247440	0.97[EUR][1000 genomes]
rs247446	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs37603	0.86[EUR][1000 genomes]
rs42471	1.00[CEU][hapmap];0.83[TSI][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061095	chr16:74519718-75407020	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv532560	chr16:74692406-75411912	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
3	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
4	nsv523405	chr16:75227969-75342846	Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
6	nsv833283	chr16:75302175-75392308	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75317400-75358000	Weak transcription	Fetal Brain Male	brain
2	chr16:75323600-75339200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr16:75324800-75340200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr16:75325000-75339600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr16:75325200-75340800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr16:75327000-75339200	Weak transcription	Fetal Kidney	kidney
7	chr16:75327400-75339200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr16:75328600-75339400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr16:75329000-75340400	Strong transcription	Thymus	Thymus
10	chr16:75329200-75339200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr16:75332000-75339800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr16:75332200-75339400	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr16:75332600-75339400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr16:75332600-75352000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr16:75333000-75339800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr16:75333400-75339600	Strong transcription	Primary B cells from cord blood	blood
17	chr16:75335000-75346400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr16:75336000-75346600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:75336600-75343000	Weak transcription	Gastric	stomach
20	chr16:75336800-75340200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr16:75336800-75346600	Weak transcription	Ovary	ovary
22	chr16:75337200-75339600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr16:75337600-75339600	Enhancers	Pancreas	Pancrea
24	chr16:75337800-75339400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr16:75337800-75339400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr16:75337800-75339800	Enhancers	Aorta	Aorta
27	chr16:75338000-75339200	Strong transcription	Brain Germinal Matrix	brain
28	chr16:75338000-75339200	Enhancers	Fetal Heart	heart
29	chr16:75338000-75339200	Genic enhancers	K562	blood
30	chr16:75338000-75339400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr16:75338000-75339600	Enhancers	Muscle Satellite Cultured Cells	--
32	chr16:75338000-75340200	Enhancers	Stomach Mucosa	stomach
33	chr16:75338000-75341000	Enhancers	NHLF	lung
34	chr16:75338000-75342200	Enhancers	Brain Hippocampus Middle	brain
35	chr16:75338200-75339200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr16:75338200-75339600	Genic enhancers	Fetal Muscle Leg	muscle
37	chr16:75338200-75340400	Enhancers	Adipose Nuclei	Adipose
38	chr16:75338200-75340800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr16:75338200-75341000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr16:75338200-75341000	Enhancers	Brain Substantia Nigra	brain
41	chr16:75338200-75341000	Enhancers	Right Atrium	heart
42	chr16:75338200-75341000	Enhancers	NH-A	brain
43	chr16:75338200-75341200	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr16:75338400-75339200	Genic enhancers	Dnd41	blood
45	chr16:75338400-75339600	Enhancers	Psoas Muscle	Psoas
46	chr16:75338400-75340000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
47	chr16:75338400-75340400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr16:75338400-75340400	Enhancers	Esophagus	oesophagus
49	chr16:75338400-75340800	Enhancers	Pancreatic Islets	Pancreatic Islet
50	chr16:75338400-75342200	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links