Variant report

Variant	rs1735462
Chromosome Location	chr3:60694205-60694206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1716720	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1716744	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1716745	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1735460	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1735461	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1735464	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1735469	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1735470	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1735471	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4405865	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60692600-60694600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:60692800-60694600	Enhancers	Osteobl	bone
3	chr3:60693200-60694400	Enhancers	NH-A	brain
4	chr3:60693200-60694600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:60693400-60694600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:60693800-60694400	Enhancers	NHDF-Ad	bronchial
7	chr3:60693800-60694800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:60694000-60694400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:60694000-60694800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:60694200-60694800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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