Variant report

Variant	rs17356014
Chromosome Location	chr9:97482400-97482401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10993350	1.00[AFR][1000 genomes]
rs10993374	1.00[AFR][1000 genomes]
rs10993381	1.00[AFR][1000 genomes]
rs10993390	1.00[AFR][1000 genomes]
rs10993391	1.00[AFR][1000 genomes]
rs12339541	1.00[AFR][1000 genomes]
rs12342610	1.00[AFR][1000 genomes]
rs12344052	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97479000-97483200	Weak transcription	HepG2	liver
2	chr9:97479000-97488400	Weak transcription	Fetal Intestine Large	intestine
3	chr9:97480000-97483400	Enhancers	Placenta	Placenta
4	chr9:97480000-97483800	Enhancers	NHEK	skin
5	chr9:97480000-97484200	Enhancers	HMEC	breast
6	chr9:97480400-97484200	Weak transcription	NHDF-Ad	bronchial
7	chr9:97481000-97483800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:97481400-97483800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:97481400-97484000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:97482000-97482600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:97482200-97482400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr9:97482200-97482800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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