Variant report

Variant	rs10993374
Chromosome Location	chr9:97621148-97621149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97619201..97621520-chr9:97626417..97628990,2	K562	blood:
2	chr9:97619538..97621584-chr9:97627252..97629069,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10217737	1.00[AFR][1000 genomes]
rs10993350	1.00[AFR][1000 genomes]
rs10993381	1.00[AFR][1000 genomes]
rs10993390	1.00[AFR][1000 genomes]
rs10993391	1.00[AFR][1000 genomes]
rs12337251	1.00[AFR][1000 genomes]
rs12339541	1.00[AFR][1000 genomes]
rs12342610	1.00[AFR][1000 genomes]
rs12344052	1.00[AFR][1000 genomes]
rs12349263	1.00[AFR][1000 genomes]
rs17356014	1.00[AFR][1000 genomes]
rs34032583	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97571800-97622600	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97589200-97622400	Weak transcription	Aorta	Aorta
3	chr9:97602400-97622200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr9:97603200-97624600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:97605600-97622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:97605800-97621800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:97605800-97626000	Weak transcription	Right Atrium	heart
8	chr9:97609800-97623800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:97610200-97623200	Weak transcription	Fetal Intestine Large	intestine
10	chr9:97610200-97625800	Weak transcription	Right Ventricle	heart
11	chr9:97610400-97622400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:97610400-97623600	Weak transcription	Fetal Kidney	kidney
13	chr9:97610600-97622200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:97610600-97623000	Weak transcription	NHLF	lung
15	chr9:97611200-97622600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:97612000-97627600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:97612800-97626200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:97614000-97627800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:97614800-97622400	Weak transcription	Primary T cells from cord blood	blood
20	chr9:97614800-97623400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr9:97614800-97623400	Weak transcription	Esophagus	oesophagus
22	chr9:97615000-97622600	Weak transcription	HSMMtube	muscle
23	chr9:97615000-97622800	Weak transcription	NHDF-Ad	bronchial
24	chr9:97615000-97623200	Weak transcription	Pancreas	Pancrea
25	chr9:97615000-97623200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:97616200-97623600	Weak transcription	Fetal Lung	lung
27	chr9:97616400-97622600	Weak transcription	Osteobl	bone
28	chr9:97616400-97623200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:97616400-97623400	Weak transcription	Brain Angular Gyrus	brain
30	chr9:97616600-97621400	Weak transcription	Brain Hippocampus Middle	brain
31	chr9:97616600-97629600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:97616800-97622600	Weak transcription	NH-A	brain
33	chr9:97616800-97623200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr9:97616800-97623400	Weak transcription	Stomach Mucosa	stomach
35	chr9:97617000-97627600	Weak transcription	Adipose Nuclei	Adipose
36	chr9:97617200-97623200	Weak transcription	HepG2	liver
37	chr9:97618400-97622400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr9:97618600-97623200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr9:97618600-97628400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:97619400-97621600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:97619800-97622200	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr9:97619800-97623000	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr9:97620600-97627800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr9:97620800-97621800	ZNF genes & repeats	Placenta	Placenta
45	chr9:97620800-97622200	Weak transcription	GM12878-XiMat	blood
46	chr9:97621000-97621400	Weak transcription	A549	lung
47	chr9:97621000-97621800	Weak transcription	Thymus	Thymus
48	chr9:97621000-97622000	Weak transcription	HSMM	muscle
49	chr9:97621000-97622200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr9:97621000-97622400	Weak transcription	Fetal Muscle Leg	muscle

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