Variant report

Variant	rs10217737
Chromosome Location	chr9:97833775-97833776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97675452..97677047-chr9:97832237..97834144,2	MCF-7	breast:
2	chr9:97488120..97490104-chr9:97832042..97834756,2	MCF-7	breast:
3	chr9:97831645..97834250-chr9:97838730..97841950,3	MCF-7	breast:
4	chr9:97831860..97833913-chr9:97840782..97843429,2	K562	blood:
5	chr9:97821556..97825075-chr9:97832512..97834984,3	MCF-7	breast:
6	chr9:97829667..97831442-chr9:97833759..97836647,2	MCF-7	breast:
7	chr9:97825460..97828452-chr9:97831131..97835733,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10993374	1.00[AFR][1000 genomes]
rs10993381	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs10993390	1.00[AFR][1000 genomes]
rs10993391	0.82[CEU][hapmap];1.00[AFR][1000 genomes]
rs10993456	0.82[CEU][hapmap]
rs12337251	1.00[AFR][1000 genomes]
rs12339541	1.00[AFR][1000 genomes]
rs12339639	0.82[CEU][hapmap]
rs12344052	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs12349263	1.00[AFR][1000 genomes]
rs34032583	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
4	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
5	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97813000-97873000	Weak transcription	K562	blood
2	chr9:97820000-97854200	Weak transcription	Fetal Brain Male	brain
3	chr9:97820400-97840800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:97820400-97843000	Weak transcription	Primary T cells from cord blood	blood
5	chr9:97820600-97875000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr9:97821000-97838400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:97821200-97839000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:97821200-97839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:97821400-97843200	Weak transcription	Fetal Brain Female	brain
10	chr9:97821800-97835600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:97822000-97834600	Strong transcription	Hela-S3	cervix
12	chr9:97822800-97845400	Weak transcription	Primary B cells from cord blood	blood
13	chr9:97823600-97834600	Strong transcription	NH-A	brain
14	chr9:97823600-97845000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr9:97824800-97844600	Weak transcription	Fetal Thymus	thymus
16	chr9:97825200-97841000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:97825400-97854400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr9:97825800-97839200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:97825800-97843400	Weak transcription	Thymus	Thymus
20	chr9:97825800-97852600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:97826000-97842800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr9:97826200-97843200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr9:97826200-97847400	Weak transcription	HUVEC	blood vessel
24	chr9:97826400-97842800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:97826400-97844200	Weak transcription	GM12878-XiMat	blood
26	chr9:97826600-97835200	Weak transcription	Spleen	Spleen
27	chr9:97827000-97839600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:97827600-97835600	Enhancers	Right Atrium	heart
29	chr9:97827800-97841400	Genic enhancers	Liver	Liver
30	chr9:97828200-97838800	Strong transcription	Fetal Intestine Large	intestine
31	chr9:97829200-97834400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr9:97829200-97838400	Genic enhancers	Brain Hippocampus Middle	brain
33	chr9:97829800-97835600	Enhancers	Rectal Smooth Muscle	rectum
34	chr9:97829800-97838000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:97830000-97833800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr9:97830600-97834000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:97830600-97834000	Genic enhancers	HSMMtube	muscle
38	chr9:97830600-97835200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr9:97830600-97835200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:97830600-97843200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr9:97830600-97844800	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr9:97830800-97837200	Genic enhancers	Ovary	ovary
43	chr9:97830800-97838600	Strong transcription	Osteobl	bone
44	chr9:97830800-97840800	Strong transcription	NHEK	skin
45	chr9:97831000-97836000	Enhancers	Psoas Muscle	Psoas
46	chr9:97831000-97839000	Genic enhancers	Left Ventricle	heart
47	chr9:97831200-97834400	Genic enhancers	HepG2	liver
48	chr9:97831200-97836400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:97831200-97841200	Genic enhancers	Pancreas	Pancrea
50	chr9:97831400-97833800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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