Variant report

Variant	rs34032583
Chromosome Location	chr9:97824565-97824566
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97822176..97825096-chr9:97827855..97830416,5	MCF-7	breast:
2	chr9:97824520..97826312-chr9:97836081..97838714,2	MCF-7	breast:
3	chr9:97805422..97807754-chr9:97822770..97825763,2	MCF-7	breast:
4	chr9:97821556..97825075-chr9:97832512..97834984,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10217737	1.00[AFR][1000 genomes]
rs10993374	1.00[AFR][1000 genomes]
rs10993381	1.00[AFR][1000 genomes]
rs10993390	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10993391	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12337251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12338668	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12339541	1.00[AFR][1000 genomes]
rs12340107	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12344052	1.00[AFR][1000 genomes]
rs12349263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16911932	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
4	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97813000-97873000	Weak transcription	K562	blood
2	chr9:97813400-97827200	Genic enhancers	Liver	Liver
3	chr9:97817600-97826000	Genic enhancers	HepG2	liver
4	chr9:97817600-97826400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:97818400-97825000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:97818800-97830400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:97819000-97824600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:97819800-97826000	Genic enhancers	HSMM	muscle
9	chr9:97820000-97824600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:97820000-97854200	Weak transcription	Fetal Brain Male	brain
11	chr9:97820200-97825000	Enhancers	Brain Substantia Nigra	brain
12	chr9:97820400-97825600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:97820400-97840800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:97820400-97843000	Weak transcription	Primary T cells from cord blood	blood
15	chr9:97820600-97824800	Weak transcription	Fetal Kidney	kidney
16	chr9:97820600-97825600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr9:97820600-97875000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr9:97821000-97838400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr9:97821200-97824600	Weak transcription	Spleen	Spleen
20	chr9:97821200-97839000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:97821200-97839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:97821400-97824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:97821400-97827200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:97821400-97843200	Weak transcription	Fetal Brain Female	brain
25	chr9:97821600-97824600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:97821600-97824600	Enhancers	Colon Smooth Muscle	Colon
27	chr9:97821600-97828200	Enhancers	Primary hematopoietic stem cells	blood
28	chr9:97821800-97825000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:97821800-97829600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr9:97821800-97835600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:97822000-97834600	Strong transcription	Hela-S3	cervix
32	chr9:97822200-97825800	Genic enhancers	HSMMtube	muscle
33	chr9:97822200-97826600	Genic enhancers	Brain Anterior Caudate	brain
34	chr9:97822200-97833200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr9:97822800-97824800	Strong transcription	Placenta	Placenta
36	chr9:97822800-97825000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr9:97822800-97826600	Genic enhancers	Esophagus	oesophagus
38	chr9:97822800-97828200	Genic enhancers	Fetal Muscle Leg	muscle
39	chr9:97822800-97830000	Enhancers	Psoas Muscle	Psoas
40	chr9:97822800-97830200	Genic enhancers	Left Ventricle	heart
41	chr9:97822800-97831600	Genic enhancers	Muscle Satellite Cultured Cells	--
42	chr9:97822800-97832800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
43	chr9:97822800-97845400	Weak transcription	Primary B cells from cord blood	blood
44	chr9:97823000-97824800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr9:97823000-97824800	Genic enhancers	Fetal Heart	heart
46	chr9:97823000-97825000	Strong transcription	Fetal Intestine Small	intestine
47	chr9:97823000-97825000	Weak transcription	Stomach Mucosa	stomach
48	chr9:97823000-97825200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:97823000-97826200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr9:97823000-97826600	Genic enhancers	Brain Inferior Temporal Lobe	brain

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