Variant report

Variant	rs17361055
Chromosome Location	chr4:152994226-152994227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1019638	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1469241	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17361097	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059489	1.00[ASN][1000 genomes]
rs28437668	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28713731	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34961631	0.81[AMR][1000 genomes]
rs4696128	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7677733	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997649	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv968029	chr4:152988941-152994456	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3408353	chr4:152991402-152996100	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152983800-153000800	Enhancers	Fetal Thymus	thymus
2	chr4:152985200-152996200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:152985200-153000000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:152986800-152998000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr4:152989400-153000400	Enhancers	Thymus	Thymus
6	chr4:152990400-152995000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr4:152990400-152995200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:152990400-152997600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr4:152990400-152998600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:152990400-153000000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:152990600-152995000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:152990800-152996600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:152991200-152995000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr4:152992200-152995400	Weak transcription	Primary T cells from cord blood	blood
15	chr4:152992800-152994600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:152992800-152995200	Enhancers	Left Ventricle	heart
17	chr4:152992800-152996200	Enhancers	Fetal Heart	heart
18	chr4:152993000-152996800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr4:152993200-152995200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr4:152993200-152995200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:152993400-152994400	Weak transcription	Lung	lung
22	chr4:152993400-152994600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:152993400-152995200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr4:152993600-152994800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:152993600-152995000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:152993600-152995200	Enhancers	Right Atrium	heart
27	chr4:152993800-152995000	Weak transcription	Brain Anterior Caudate	brain
28	chr4:152994000-152995200	Enhancers	Fetal Muscle Trunk	muscle
29	chr4:152994000-152995400	Weak transcription	Right Ventricle	heart
30	chr4:152994000-152996400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr4:152994200-152995200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr4:152994200-152995200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr4:152994200-152995600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:152994200-152996200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr4:152994200-152996200	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links