Variant report

Variant	rs2059489
Chromosome Location	chr4:153002784-153002785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1019638	1.00[ASN][1000 genomes]
rs17361055	1.00[ASN][1000 genomes]
rs17361097	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28437668	1.00[ASN][1000 genomes]
rs28713731	1.00[ASN][1000 genomes]
rs4696128	1.00[ASN][1000 genomes]
rs717255	0.85[AMR][1000 genomes]
rs7677733	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152996600-153002800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr4:152997400-153011800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:152997600-153003400	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr4:152998800-153003800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr4:152999800-153003200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr4:152999800-153003600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:153000000-153003000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr4:153000000-153003600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr4:153001200-153003600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:153001200-153008800	Enhancers	Thymus	Thymus
11	chr4:153001400-153003000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:153001400-153003200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr4:153001600-153003200	Enhancers	Primary T cells from cord blood	blood
14	chr4:153001600-153003600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr4:153002200-153002800	Flanking Active TSS	Dnd41	blood
16	chr4:153002400-153003000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
17	chr4:153002400-153003200	Genic enhancers	Fetal Thymus	thymus
18	chr4:153002600-153010400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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