Variant report

Variant	rs17362475
Chromosome Location	chr14:31103871-31103872
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr14:31103750-31104265	MCF-7	breast:	n/a	n/a
2	SIN3AK20	chr14:31103781-31104421	MCF-7	breast:	n/a	n/a
3	GATA3	chr14:31103624-31104535	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:31095388..31097484-chr14:31101904..31104566,2	MCF-7	breast:
2	chr14:31101730..31104155-chr14:31107866..31110799,3	MCF-7	breast:
3	chr14:31098733..31102116-chr14:31103840..31105961,3	MCF-7	breast:

Variant related genes	Relation type
SCFD1	TF binding region
ENSG00000092108	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17348231	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17348259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17363198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17433265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1884582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28483238	1.00[EUR][1000 genomes]
rs45531233	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58653311	1.00[EUR][1000 genomes]
rs7157286	1.00[EUR][1000 genomes]
rs73253017	1.00[EUR][1000 genomes]
rs73254546	1.00[EUR][1000 genomes]
rs73254548	1.00[EUR][1000 genomes]
rs73254556	1.00[EUR][1000 genomes]
rs73254558	1.00[EUR][1000 genomes]
rs73254560	0.92[EUR][1000 genomes]
rs73254562	1.00[EUR][1000 genomes]
rs73254580	1.00[EUR][1000 genomes]
rs73254586	1.00[EUR][1000 genomes]
rs73254588	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv564171	chr14:31068090-31149630	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31092200-31104000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:31092200-31121000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:31092200-31133200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:31092200-31133200	Weak transcription	Esophagus	oesophagus
5	chr14:31092400-31122800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:31092800-31113200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:31092800-31114200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:31093600-31107200	Weak transcription	Right Ventricle	heart
9	chr14:31093600-31127200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:31093800-31113800	Weak transcription	Brain Substantia Nigra	brain
11	chr14:31093800-31159600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:31094000-31111200	Weak transcription	HSMMtube	muscle
13	chr14:31094000-31113200	Weak transcription	Fetal Brain Male	brain
14	chr14:31094000-31122000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr14:31094200-31111200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:31094200-31121000	Weak transcription	Spleen	Spleen
17	chr14:31094200-31145200	Weak transcription	Small Intestine	intestine
18	chr14:31094600-31104600	Weak transcription	Colon Smooth Muscle	Colon
19	chr14:31094600-31109200	Weak transcription	K562	blood
20	chr14:31095200-31112400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr14:31095200-31119200	Weak transcription	Colonic Mucosa	Colon
22	chr14:31095600-31114400	Weak transcription	Fetal Heart	heart
23	chr14:31095800-31104000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:31095800-31110200	Weak transcription	Stomach Mucosa	stomach
25	chr14:31095800-31111000	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr14:31095800-31121000	Weak transcription	Ovary	ovary
27	chr14:31095800-31121000	Weak transcription	Thymus	Thymus
28	chr14:31096000-31104000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr14:31096000-31111200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr14:31096000-31116600	Weak transcription	Lung	lung
31	chr14:31096000-31121000	Weak transcription	Pancreas	Pancrea
32	chr14:31096000-31167400	Weak transcription	Gastric	stomach
33	chr14:31096200-31113200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr14:31097200-31133800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:31097800-31104000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr14:31099400-31105400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr14:31099400-31106400	Strong transcription	Liver	Liver
38	chr14:31099400-31106800	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr14:31099400-31107400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr14:31099400-31109400	Strong transcription	Duodenum Mucosa	Duodenum
41	chr14:31099400-31110200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr14:31099600-31105000	Strong transcription	Placenta	Placenta
43	chr14:31099600-31105200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:31099600-31105200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr14:31099600-31105200	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr14:31099600-31105200	Strong transcription	Osteobl	bone
47	chr14:31099600-31106800	Strong transcription	Primary B cells from peripheral blood	blood
48	chr14:31099600-31107000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:31099600-31111000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr14:31099600-31113000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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