Variant report

Variant	rs17433265
Chromosome Location	chr14:31062325-31062326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31060440..31063351-chr14:31089762..31092777,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000092108	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17348231	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17348259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17362475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17363198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1884582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28483238	1.00[EUR][1000 genomes]
rs45531233	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58653311	1.00[EUR][1000 genomes]
rs7157286	1.00[EUR][1000 genomes]
rs73253017	1.00[EUR][1000 genomes]
rs73254546	1.00[EUR][1000 genomes]
rs73254548	1.00[EUR][1000 genomes]
rs73254556	1.00[EUR][1000 genomes]
rs73254558	1.00[EUR][1000 genomes]
rs73254560	0.92[EUR][1000 genomes]
rs73254562	1.00[EUR][1000 genomes]
rs73254580	1.00[EUR][1000 genomes]
rs73254586	1.00[EUR][1000 genomes]
rs73254588	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31029000-31071800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:31029200-31071800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:31032000-31067400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr14:31032400-31067200	Weak transcription	Fetal Stomach	stomach
5	chr14:31033800-31070000	Weak transcription	Lung	lung
6	chr14:31040200-31069800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:31043000-31079600	Weak transcription	Gastric	stomach
8	chr14:31043000-31090600	Weak transcription	Small Intestine	intestine
9	chr14:31045000-31070000	Weak transcription	Aorta	Aorta
10	chr14:31045800-31067400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:31046800-31069800	Weak transcription	Fetal Kidney	kidney
12	chr14:31047000-31069800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:31047000-31079600	Weak transcription	Pancreas	Pancrea
14	chr14:31047200-31063600	Weak transcription	Fetal Intestine Small	intestine
15	chr14:31049600-31079600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:31050200-31079800	Weak transcription	Brain Angular Gyrus	brain
17	chr14:31050800-31067800	Weak transcription	Ovary	ovary
18	chr14:31051800-31064600	Strong transcription	HSMM	muscle
19	chr14:31051800-31079600	Weak transcription	Fetal Brain Male	brain
20	chr14:31052000-31077400	Weak transcription	Psoas Muscle	Psoas
21	chr14:31053600-31079800	Weak transcription	Brain Substantia Nigra	brain
22	chr14:31053800-31067600	Weak transcription	Brain Anterior Caudate	brain
23	chr14:31053800-31070200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr14:31053800-31090600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr14:31054200-31090400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr14:31054400-31066800	Weak transcription	Brain Germinal Matrix	brain
27	chr14:31054600-31062800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr14:31054600-31063400	Strong transcription	A549	lung
29	chr14:31054600-31066800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr14:31054600-31068000	Weak transcription	HSMMtube	muscle
31	chr14:31054800-31063800	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr14:31054800-31066800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:31054800-31066800	Weak transcription	Fetal Intestine Large	intestine
34	chr14:31054800-31072000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr14:31054800-31087200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr14:31055000-31086800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr14:31055200-31062800	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr14:31055200-31062800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr14:31055200-31063000	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr14:31055200-31063000	Strong transcription	Primary hematopoietic stem cells	blood
41	chr14:31055200-31065000	Strong transcription	Osteobl	bone
42	chr14:31055400-31063000	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr14:31055400-31063800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:31055400-31067400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr14:31055400-31069800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:31055400-31070000	Weak transcription	Colonic Mucosa	Colon
47	chr14:31055600-31088000	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr14:31056000-31063400	Strong transcription	Dnd41	blood
49	chr14:31056200-31063600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr14:31056200-31067600	Weak transcription	Brain Hippocampus Middle	brain

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