Variant report

Variant	rs17365537
Chromosome Location	chr12:26259859-26259860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2137547	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2343072	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55694223	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61915685	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61915687	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7300076	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17365537	LRMP	cis	lymphoblastoid	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26251000-26265800	Weak transcription	HSMM	muscle
2	chr12:26255600-26264400	Weak transcription	Fetal Intestine Small	intestine
3	chr12:26257400-26262200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr12:26258000-26262200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:26258200-26265000	Weak transcription	Fetal Intestine Large	intestine
6	chr12:26259000-26262200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr12:26259400-26260000	Enhancers	Psoas Muscle	Psoas
8	chr12:26259600-26261800	Weak transcription	Adipose Nuclei	Adipose
9	chr12:26259800-26261800	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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