Variant report

Variant	rs17367437
Chromosome Location	chr5:92538007-92538008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17082876	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17082914	0.82[EUR][1000 genomes]
rs17286491	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17288882	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17359880	1.00[EUR][1000 genomes]
rs17360032	1.00[EUR][1000 genomes]
rs17360156	1.00[EUR][1000 genomes]
rs17360219	1.00[EUR][1000 genomes]
rs17367472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17367646	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345922	0.89[EUR][1000 genomes]
rs4128856	0.89[EUR][1000 genomes]
rs4299719	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4441863	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876147	1.00[EUR][1000 genomes]
rs7702897	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92536000-92538600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:92538000-92538800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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