Variant report

Variant	rs4299719
Chromosome Location	chr5:92572526-92572527
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17082876	0.82[EUR][1000 genomes]
rs17082914	0.82[EUR][1000 genomes]
rs17286491	1.00[EUR][1000 genomes]
rs17288882	1.00[EUR][1000 genomes]
rs17359880	1.00[EUR][1000 genomes]
rs17360032	1.00[EUR][1000 genomes]
rs17360156	1.00[EUR][1000 genomes]
rs17360219	1.00[EUR][1000 genomes]
rs17367437	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367472	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17367646	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345922	0.89[EUR][1000 genomes]
rs4128856	0.89[EUR][1000 genomes]
rs4441863	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876147	1.00[EUR][1000 genomes]
rs7702897	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv508370	chr5:92539782-92575241	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv462252	chr5:92557969-92595939	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv598941	chr5:92557969-92595939	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv462253	chr5:92557969-92611658	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv598942	chr5:92557969-92611658	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1028785	chr5:92564952-92596445	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92570800-92573000	Enhancers	Hela-S3	cervix
2	chr5:92572400-92573000	Enhancers	NHLF	lung
3	chr5:92572400-92573200	Enhancers	HMEC	breast
4	chr5:92572400-92573600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:92572400-92573600	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links