Variant report

Variant	rs17367613
Chromosome Location	chr4:130262824-130262825
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10518546	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11943511	1.00[EUR][1000 genomes]
rs13102645	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13109938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13128188	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13130195	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13149187	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17014599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014614	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014727	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34010234	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34466472	1.00[EUR][1000 genomes]
rs34864289	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34955650	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34974459	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35004602	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35255990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35524133	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35796550	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35918555	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71613929	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71613931	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71613934	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879932	chr4:130167642-130264517	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130256800-130263000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:130258400-130267600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:130258800-130265400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:130262800-130263400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr4:130262800-130263600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:130262800-130263800	Enhancers	Primary monocytes fromperipheralblood	blood

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