Variant report

Variant	rs35524133
Chromosome Location	chr4:130277071-130277072
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10518546	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11943511	0.93[EUR][1000 genomes]
rs13102645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13109938	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13128188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13130195	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13149187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014599	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17014611	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17014614	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17014727	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17367613	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34010234	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34099241	0.82[EUR][1000 genomes]
rs34466472	0.93[EUR][1000 genomes]
rs34864289	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34955650	0.93[EUR][1000 genomes]
rs34974459	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35004602	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35255990	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35796550	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35918555	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71613927	0.82[EUR][1000 genomes]
rs71613929	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71613931	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71613934	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130275400-130279600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:130275600-130277600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:130276000-130277400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:130276000-130277600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:130276200-130277200	Enhancers	Fetal Brain Female	brain
6	chr4:130276200-130277400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:130276200-130277600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:130276400-130277200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:130276400-130277200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:130276600-130277200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:130276600-130277200	Enhancers	Adipose Nuclei	Adipose
12	chr4:130276600-130277200	Enhancers	Rectal Smooth Muscle	rectum
13	chr4:130276600-130277200	Enhancers	NH-A	brain
14	chr4:130276600-130277200	Enhancers	Osteobl	bone
15	chr4:130276600-130279600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:130276800-130277200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:130276800-130279600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr4:130276800-130279800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr4:130277000-130277200	Enhancers	Colon Smooth Muscle	Colon
20	chr4:130277000-130277200	Flanking Active TSS	Fetal Heart	heart
21	chr4:130277000-130277800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:130277000-130279800	Weak transcription	Fetal Lung	lung

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