Variant report

Variant	rs17368567
Chromosome Location	chr5:92684177-92684178
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56218511	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92672600-92684400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:92677000-92685400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:92678800-92684200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:92683600-92684200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:92683600-92684200	Bivalent Enhancer	HepG2	liver
6	chr5:92683600-92684800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:92683600-92684800	Enhancers	Fetal Muscle Trunk	muscle
8	chr5:92683600-92685600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:92683800-92685000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:92683800-92686400	Enhancers	HMEC	breast
11	chr5:92684000-92684400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:92684000-92684400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:92684000-92684600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:92684000-92684600	Enhancers	Fetal Muscle Leg	muscle
15	chr5:92684000-92684800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr5:92684000-92686400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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