Variant report

Variant	rs17369667
Chromosome Location	chr6:145391740-145391741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4896777	0.83[ASN][1000 genomes]
rs62437687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570673	0.83[ASN][1000 genomes]
rs6913807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914297	0.83[ASN][1000 genomes]
rs6920213	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015500	chr6:145388558-145421503	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145386200-145391800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:145388000-145393000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:145388000-145393200	Enhancers	NHDF-Ad	bronchial
4	chr6:145388200-145393200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:145389400-145391800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:145389400-145391800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:145389400-145391800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:145389400-145391800	Weak transcription	HMEC	breast
9	chr6:145390600-145393000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:145390800-145391800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:145390800-145392800	Enhancers	HSMMtube	muscle
12	chr6:145391000-145393000	Enhancers	Osteobl	bone
13	chr6:145391200-145393000	Enhancers	NHLF	lung
14	chr6:145391400-145392600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:145391400-145393000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:145391600-145392000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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