Variant report

Variant	rs17370773
Chromosome Location	chr1:155825030-155825031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155823442..155829143-chr1:155879989..155882670,6	MCF-7	breast:
2	chr1:155824896..155829386-chr1:155902844..155905236,4	MCF-7	breast:
3	chr1:155821775..155825361-chr1:155825507..155828654,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116580	Chromatin interaction
ENSG00000132680	Chromatin interaction
ENSG00000143622	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1094462	1.00[CEU][hapmap]
rs11803678	1.00[CEU][hapmap]
rs13376121	0.97[EUR][1000 genomes]
rs13376235	0.97[EUR][1000 genomes]
rs16837037	1.00[CEU][hapmap]
rs16837063	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1749415	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2363012	0.97[EUR][1000 genomes]
rs4612618	0.89[AMR][1000 genomes]
rs4933	1.00[CEU][hapmap]
rs4971065	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4971106	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs552778	1.00[CEU][hapmap]
rs598176	1.00[CEU][hapmap]
rs682020	1.00[CEU][hapmap]
rs7525057	1.00[CEU][hapmap]
rs7530726	0.97[EUR][1000 genomes]
rs822019	1.00[CEU][hapmap]
rs822020	1.00[CEU][hapmap]
rs822022	1.00[CEU][hapmap]
rs822482	0.97[EUR][1000 genomes]
rs822495	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs822497	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs822499	0.97[EUR][1000 genomes]
rs822500	0.95[EUR][1000 genomes]
rs822523	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1003170	chr1:155762204-155836564	Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155792200-155826000	Weak transcription	Stomach Mucosa	stomach
2	chr1:155792400-155826600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:155803800-155826000	Weak transcription	Right Atrium	heart
4	chr1:155808000-155826000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:155810000-155825200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr1:155810400-155825400	Strong transcription	Fetal Stomach	stomach
7	chr1:155810600-155825400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr1:155812400-155825400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr1:155812800-155825400	Strong transcription	Fetal Thymus	thymus
10	chr1:155813000-155825400	Strong transcription	Thymus	Thymus
11	chr1:155813200-155826200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:155813600-155826200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:155813800-155826000	Weak transcription	Right Ventricle	heart
14	chr1:155815200-155825400	Strong transcription	Fetal Intestine Small	intestine
15	chr1:155815200-155825800	Weak transcription	Fetal Heart	heart
16	chr1:155815800-155826000	Weak transcription	Psoas Muscle	Psoas
17	chr1:155817200-155825400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:155817200-155825600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:155818200-155825200	Strong transcription	Primary B cells from peripheral blood	blood
20	chr1:155819400-155825400	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr1:155819400-155825400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:155819400-155825600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:155819600-155825400	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr1:155819600-155825400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:155819800-155825400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr1:155819800-155825400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:155819800-155825400	Strong transcription	Liver	Liver
28	chr1:155819800-155825600	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr1:155820000-155825200	Strong transcription	Placenta	Placenta
30	chr1:155820000-155825400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:155820000-155825400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr1:155820000-155825400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr1:155820200-155825400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:155820200-155825400	Strong transcription	Primary hematopoietic stem cells	blood
35	chr1:155820200-155825400	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr1:155820400-155825200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr1:155820400-155825200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:155820600-155825400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr1:155820600-155825600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr1:155820800-155825400	Strong transcription	Spleen	Spleen
41	chr1:155821000-155825200	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr1:155821000-155825400	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr1:155821200-155825200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr1:155821200-155825400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr1:155821400-155825400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr1:155821400-155825400	Strong transcription	Fetal Muscle Trunk	muscle
47	chr1:155821400-155825600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr1:155821600-155825200	Strong transcription	NHDF-Ad	bronchial
49	chr1:155821600-155825400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr1:155821600-155825400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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