Variant report

Variant	rs13376121
Chromosome Location	chr1:155821440-155821441
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1094462	0.80[EUR][1000 genomes]
rs11803678	0.80[EUR][1000 genomes]
rs13374129	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13376235	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1624846	0.80[EUR][1000 genomes]
rs16837037	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16837063	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17370773	0.97[EUR][1000 genomes]
rs1749415	1.00[EUR][1000 genomes]
rs1749421	0.80[EUR][1000 genomes]
rs2363012	1.00[EUR][1000 genomes]
rs2477541	0.80[EUR][1000 genomes]
rs2686255	0.80[EUR][1000 genomes]
rs28574887	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35044707	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs41264969	0.86[AFR][1000 genomes]
rs4612618	0.80[EUR][1000 genomes]
rs4933	0.86[AFR][1000 genomes]
rs4971065	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4971106	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56758819	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59706606	0.80[EUR][1000 genomes]
rs59791187	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs682020	0.80[EUR][1000 genomes]
rs73001021	0.80[EUR][1000 genomes]
rs7525057	0.85[AFR][1000 genomes]
rs7530726	1.00[EUR][1000 genomes]
rs7535158	0.85[AFR][1000 genomes]
rs822016	0.80[EUR][1000 genomes]
rs822018	0.80[EUR][1000 genomes]
rs822019	0.80[EUR][1000 genomes]
rs822020	0.80[EUR][1000 genomes]
rs822022	0.80[EUR][1000 genomes]
rs822482	1.00[EUR][1000 genomes]
rs822495	0.97[EUR][1000 genomes]
rs822497	1.00[EUR][1000 genomes]
rs822499	1.00[EUR][1000 genomes]
rs822500	0.97[EUR][1000 genomes]
rs822523	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1003170	chr1:155762204-155836564	Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155783600-155823000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:155787600-155822000	Weak transcription	Esophagus	oesophagus
3	chr1:155789600-155822000	Weak transcription	Fetal Brain Male	brain
4	chr1:155792200-155822000	Weak transcription	Pancreas	Pancrea
5	chr1:155792200-155826000	Weak transcription	Stomach Mucosa	stomach
6	chr1:155792400-155826600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:155792600-155822800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr1:155796800-155822800	Weak transcription	Small Intestine	intestine
9	chr1:155798000-155822000	Weak transcription	Aorta	Aorta
10	chr1:155803800-155826000	Weak transcription	Right Atrium	heart
11	chr1:155804600-155821600	Weak transcription	NHDF-Ad	bronchial
12	chr1:155808000-155826000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:155810000-155825200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr1:155810400-155825400	Strong transcription	Fetal Stomach	stomach
15	chr1:155810600-155825400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr1:155811400-155825000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:155812400-155825400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:155812800-155825400	Strong transcription	Fetal Thymus	thymus
19	chr1:155813000-155825400	Strong transcription	Thymus	Thymus
20	chr1:155813200-155826200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr1:155813600-155826200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:155813800-155826000	Weak transcription	Right Ventricle	heart
23	chr1:155814400-155821600	Weak transcription	Brain Hippocampus Middle	brain
24	chr1:155814800-155822000	Weak transcription	Colonic Mucosa	Colon
25	chr1:155815200-155825400	Strong transcription	Fetal Intestine Small	intestine
26	chr1:155815200-155825800	Weak transcription	Fetal Heart	heart
27	chr1:155815400-155822000	Weak transcription	Gastric	stomach
28	chr1:155815600-155822800	Weak transcription	Colon Smooth Muscle	Colon
29	chr1:155815800-155821600	Weak transcription	Fetal Kidney	kidney
30	chr1:155815800-155821600	Weak transcription	HMEC	breast
31	chr1:155815800-155822000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr1:155815800-155822000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr1:155815800-155822000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr1:155815800-155822000	Weak transcription	NHLF	lung
35	chr1:155815800-155823000	Weak transcription	HSMMtube	muscle
36	chr1:155815800-155826000	Weak transcription	Psoas Muscle	Psoas
37	chr1:155816000-155821800	Weak transcription	A549	lung
38	chr1:155816200-155821600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr1:155817000-155821600	Weak transcription	HSMM	muscle
40	chr1:155817200-155821600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr1:155817200-155822800	Weak transcription	NH-A	brain
42	chr1:155817200-155825400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:155817200-155825600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:155817400-155823200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
45	chr1:155817800-155821600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr1:155818200-155821800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr1:155818200-155822600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr1:155818200-155825200	Strong transcription	Primary B cells from peripheral blood	blood
49	chr1:155818400-155822000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr1:155818400-155822600	Weak transcription	HepG2	liver

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