Variant report

Variant	rs35044707
Chromosome Location	chr1:155772842-155772843
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1094462	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11803678	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13374129	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13376121	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13376235	0.94[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1624846	1.00[EUR][1000 genomes]
rs16837037	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16837063	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs171167	0.90[EUR][1000 genomes]
rs17370773	1.00[CEU][hapmap]
rs1749415	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs1749417	0.84[EUR][1000 genomes]
rs1749421	1.00[EUR][1000 genomes]
rs1765284	0.97[EUR][1000 genomes]
rs1962247	0.95[EUR][1000 genomes]
rs2363012	0.80[EUR][1000 genomes]
rs2477541	1.00[EUR][1000 genomes]
rs2686255	1.00[EUR][1000 genomes]
rs28574887	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2985708	0.95[EUR][1000 genomes]
rs348206	0.90[EUR][1000 genomes]
rs41264969	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4253908	0.95[EUR][1000 genomes]
rs4612618	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4933	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4971065	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4971086	0.82[EUR][1000 genomes]
rs4971087	0.82[EUR][1000 genomes]
rs4971106	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs543854	0.90[EUR][1000 genomes]
rs548809	0.90[EUR][1000 genomes]
rs552778	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs56758819	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59706606	1.00[EUR][1000 genomes]
rs59791187	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs598176	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs61258690	0.85[EUR][1000 genomes]
rs621181	0.85[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs682020	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs708612	0.95[EUR][1000 genomes]
rs73001021	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7525057	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7530726	0.80[EUR][1000 genomes]
rs7535158	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs822016	1.00[EUR][1000 genomes]
rs822018	1.00[EUR][1000 genomes]
rs822019	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs822020	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs822022	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs822026	0.95[EUR][1000 genomes]
rs822482	0.80[EUR][1000 genomes]
rs822495	1.00[CEU][hapmap]
rs822497	1.00[CEU][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs822499	0.80[EUR][1000 genomes]
rs822523	0.80[EUR][1000 genomes]
rs9426929	0.95[EUR][1000 genomes]
rs9427223	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	nsv428246	chr1:155558197-155785831	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv872469	chr1:155743310-155810293	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1003170	chr1:155762204-155836564	Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155715400-155789200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:155716000-155793400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:155716600-155781800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:155717400-155795800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:155720200-155798200	Strong transcription	Fetal Thymus	thymus
6	chr1:155720200-155803600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:155720400-155796800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr1:155732200-155789200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:155743200-155773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:155746400-155774000	Weak transcription	Pancreas	Pancrea
11	chr1:155746400-155791400	Weak transcription	Stomach Mucosa	stomach
12	chr1:155747600-155776200	Weak transcription	Right Ventricle	heart
13	chr1:155747600-155787200	Weak transcription	Esophagus	oesophagus
14	chr1:155747800-155785600	Weak transcription	Fetal Brain Male	brain
15	chr1:155747800-155791200	Weak transcription	Fetal Heart	heart
16	chr1:155748000-155789400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:155751800-155777600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr1:155755200-155774000	Weak transcription	Colonic Mucosa	Colon
19	chr1:155755600-155777400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr1:155758000-155777200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:155758200-155777200	Strong transcription	Fetal Intestine Large	intestine
22	chr1:155758800-155778400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:155759000-155777200	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr1:155759200-155777400	Strong transcription	Placenta	Placenta
25	chr1:155760200-155777200	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr1:155760400-155779000	Strong transcription	Thymus	Thymus
27	chr1:155760800-155777200	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr1:155761600-155776800	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr1:155761600-155778400	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr1:155761800-155777000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr1:155761800-155777200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr1:155762000-155777200	Strong transcription	Liver	Liver
33	chr1:155762200-155775000	Strong transcription	Primary B cells from peripheral blood	blood
34	chr1:155762200-155798000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:155762600-155779200	Strong transcription	Fetal Stomach	stomach
36	chr1:155762600-155785000	Strong transcription	Fetal Intestine Small	intestine
37	chr1:155762800-155779200	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr1:155763000-155773600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr1:155763000-155779000	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr1:155764200-155773200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr1:155765000-155773400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr1:155765200-155773400	Weak transcription	Brain Substantia Nigra	brain
43	chr1:155765200-155773600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr1:155765200-155803800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr1:155765200-155813200	Weak transcription	Psoas Muscle	Psoas
46	chr1:155765600-155773400	Weak transcription	Ovary	ovary
47	chr1:155765600-155773600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr1:155765800-155773200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr1:155766200-155777200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr1:155766200-155782800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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