Variant report
Variant | rs1737327 |
---|---|
Chromosome Location | chr6:163800034-163800035 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
ENSG00000270419 | Chromatin interaction |
ENSG00000112531 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11760168 | 0.82[ASN][1000 genomes] |
rs11962088 | 0.87[ASN][1000 genomes] |
rs11964436 | 0.87[ASN][1000 genomes] |
rs1336223 | 0.84[ASN][1000 genomes] |
rs1336224 | 0.84[ASN][1000 genomes] |
rs1336225 | 0.84[ASN][1000 genomes] |
rs1414724 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1591536 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs16894934 | 0.87[ASN][1000 genomes] |
rs1737319 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1737320 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1737321 | 0.84[ASN][1000 genomes] |
rs1737322 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1737324 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1737325 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1737326 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1764009 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs1764010 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1764011 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1764012 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1764013 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1764015 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1764019 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2064224 | 0.81[ASN][1000 genomes] |
rs2064226 | 0.84[ASN][1000 genomes] |
rs2064227 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs2064230 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2064231 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2065857 | 0.87[ASN][1000 genomes] |
rs2744419 | 0.89[EUR][1000 genomes] |
rs2784872 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs2784875 | 0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs34979127 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4709713 | 0.81[ASN][1000 genomes] |
rs4709714 | 0.90[ASN][1000 genomes] |
rs56062115 | 0.83[ASN][1000 genomes] |
rs6455897 | 0.82[ASN][1000 genomes] |
rs6908317 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs6927805 | 0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs6929436 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs6939218 | 0.80[ASN][1000 genomes] |
rs718878 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs718879 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs73013582 | 0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv932127 | chr6:163000261-163950870 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
2 | nsv1022610 | chr6:163591786-163814041 | Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | nsv534621 | chr6:163731741-163950870 | Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv970668 | chr6:163792636-163802489 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:163791000-163813000 | Weak transcription | Right Atrium | heart |
2 | chr6:163794600-163801200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
3 | chr6:163798000-163802400 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
4 | chr6:163799600-163800800 | Enhancers | Lung | lung |
5 | chr6:163800000-163800800 | Enhancers | Spleen | Spleen |