Variant report

Variant	rs6455897
Chromosome Location	chr6:163799383-163799384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163799290..163800994-chr6:163802923..163805842,2	K562	blood:
2	chr6:163795985..163800346-chr6:163833926..163837021,4	K562	blood:

Variant related genes	Relation type
ENSG00000112531	Chromatin interaction
ENSG00000270419	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11751433	0.84[ASN][1000 genomes]
rs11760168	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962088	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs13202116	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13202733	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13204052	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1336223	0.94[ASN][1000 genomes]
rs1336224	0.94[ASN][1000 genomes]
rs1336225	0.94[ASN][1000 genomes]
rs16895015	0.86[JPT][hapmap]
rs1737319	0.88[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1737320	0.84[ASN][1000 genomes]
rs1737321	0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1737322	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1737324	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1737325	0.86[ASN][1000 genomes]
rs1737326	0.86[ASN][1000 genomes]
rs1737327	0.82[ASN][1000 genomes]
rs1737328	0.88[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1764009	0.89[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1764010	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1764011	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1764012	0.86[ASN][1000 genomes]
rs1764013	0.86[ASN][1000 genomes]
rs1764020	0.91[ASN][1000 genomes]
rs2064224	0.98[ASN][1000 genomes]
rs2064226	0.94[ASN][1000 genomes]
rs2064227	0.97[ASN][1000 genomes]
rs2143358	0.84[JPT][hapmap]
rs2294698	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs2294703	0.84[JPT][hapmap]
rs2294706	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2294709	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2784871	0.86[ASN][1000 genomes]
rs2784872	0.94[ASN][1000 genomes]
rs2784875	0.94[ASN][1000 genomes]
rs34720350	0.91[EUR][1000 genomes]
rs3763197	0.84[JPT][hapmap]
rs3857503	0.89[AMR][1000 genomes]
rs4263561	0.94[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4709713	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4709714	0.88[ASN][1000 genomes]
rs4709716	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs4709717	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs6908317	0.94[ASN][1000 genomes]
rs6921172	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6927805	0.94[ASN][1000 genomes]
rs6929436	0.92[ASN][1000 genomes]
rs6931903	0.84[JPT][hapmap]
rs6939218	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs715020	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs7758706	0.84[JPT][hapmap]
rs7772756	0.85[JPT][hapmap]
rs9346960	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs9347760	0.82[CHB][hapmap]
rs9356112	0.86[EUR][1000 genomes]
rs9364687	0.83[AMR][1000 genomes]
rs9364689	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs9364691	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs9364692	0.88[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv970668	chr6:163792636-163802489	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163791000-163813000	Weak transcription	Right Atrium	heart
2	chr6:163794600-163801200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:163795200-163800000	Weak transcription	Spleen	Spleen
4	chr6:163798000-163802400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links