Variant report

Variant	rs6921172
Chromosome Location	chr6:163808114-163808115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163808044..163809633-chr6:163814692..163817070,2	K562	blood:
2	chr6:163800485..163802168-chr6:163807944..163809587,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11760168	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11962088	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13202116	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13202733	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13204052	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1336223	0.84[ASN][1000 genomes]
rs1336224	0.84[ASN][1000 genomes]
rs1336225	0.84[ASN][1000 genomes]
rs1414724	0.85[ASN][1000 genomes]
rs1591536	0.85[ASN][1000 genomes]
rs16894934	0.85[ASN][1000 genomes]
rs16895015	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1737319	0.90[JPT][hapmap]
rs1737321	0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1737322	0.91[JPT][hapmap]
rs1737324	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs1737328	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17591955	0.83[CHB][hapmap]
rs1764009	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1764010	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs1764011	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs1764015	0.85[ASN][1000 genomes]
rs1764019	0.85[ASN][1000 genomes]
rs1764020	0.91[ASN][1000 genomes]
rs2064224	0.81[ASN][1000 genomes]
rs2064226	0.84[ASN][1000 genomes]
rs2064227	0.81[ASN][1000 genomes]
rs2064230	0.83[ASN][1000 genomes]
rs2064231	0.80[ASN][1000 genomes]
rs2065857	0.85[ASN][1000 genomes]
rs2143358	0.84[JPT][hapmap]
rs2294698	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2294703	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs2294706	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs2294709	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs2784872	0.84[ASN][1000 genomes]
rs2784875	0.84[ASN][1000 genomes]
rs34979127	0.80[ASN][1000 genomes]
rs3763197	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs3857503	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3857504	0.84[JPT][hapmap]
rs3904720	0.84[JPT][hapmap]
rs4263561	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4709713	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4709716	0.94[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs4709717	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs55779730	0.85[ASN][1000 genomes]
rs56062115	0.89[ASN][1000 genomes]
rs6455897	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6908317	0.84[ASN][1000 genomes]
rs6927805	0.84[ASN][1000 genomes]
rs6929436	0.86[ASN][1000 genomes]
rs6931903	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs6939218	0.88[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs715020	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs718878	0.85[ASN][1000 genomes]
rs718879	0.85[ASN][1000 genomes]
rs73013582	0.85[ASN][1000 genomes]
rs7758706	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs7772756	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs9346960	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs9347760	0.88[CHB][hapmap]
rs9364687	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9364689	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs9364691	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs9364692	0.94[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163791000-163813000	Weak transcription	Right Atrium	heart
2	chr6:163802600-163812800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:163803200-163812600	Weak transcription	Fetal Heart	heart
4	chr6:163805400-163813000	Weak transcription	HSMM	muscle
5	chr6:163806400-163809400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:163806400-163810000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:163806400-163810200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:163807200-163808200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:163807200-163808600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:163807200-163809200	Enhancers	HUVEC	blood vessel
11	chr6:163807400-163808200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:163807400-163808800	Enhancers	NHEK	skin
13	chr6:163807600-163808800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:163807600-163808800	Enhancers	Hela-S3	cervix
15	chr6:163807600-163809000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:163807600-163809400	Enhancers	Fetal Muscle Leg	muscle
17	chr6:163807800-163808600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:163807800-163808800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:163807800-163808800	Weak transcription	Lung	lung
20	chr6:163807800-163808800	Enhancers	HMEC	breast
21	chr6:163807800-163809800	Enhancers	Spleen	Spleen
22	chr6:163807800-163810000	Enhancers	HepG2	liver
23	chr6:163808000-163809000	Weak transcription	Psoas Muscle	Psoas
24	chr6:163808000-163812800	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:163808000-163813400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr6:163808000-163817000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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