Variant report

Variant	rs9364687
Chromosome Location	chr6:163817911-163817912
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163812076..163814211-chr6:163817501..163820074,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11760168	0.89[AMR][1000 genomes]
rs11962088	0.88[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs13202116	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13202733	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13204052	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1336223	0.81[ASN][1000 genomes]
rs1336224	0.81[ASN][1000 genomes]
rs1336225	0.81[ASN][1000 genomes]
rs1414724	0.81[ASN][1000 genomes]
rs1591536	0.81[ASN][1000 genomes]
rs16894934	0.81[ASN][1000 genomes]
rs16895015	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs1737319	0.85[JPT][hapmap]
rs1737321	0.82[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs1737322	0.85[JPT][hapmap]
rs1737324	0.83[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap]
rs1737328	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs17591955	0.83[CHB][hapmap]
rs1764009	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs1764010	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs1764011	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs1764015	0.81[ASN][1000 genomes]
rs1764019	0.81[ASN][1000 genomes]
rs1764020	0.87[ASN][1000 genomes]
rs2064226	0.81[ASN][1000 genomes]
rs2065857	0.81[ASN][1000 genomes]
rs2143358	0.88[CHD][hapmap];0.90[JPT][hapmap]
rs2294698	0.94[CHB][hapmap];0.97[CHD][hapmap];0.80[GIH][hapmap];0.85[JPT][hapmap]
rs2294703	0.83[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs2294706	0.94[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap]
rs2294709	0.94[CHB][hapmap];0.97[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap]
rs2784872	0.81[ASN][1000 genomes]
rs2784875	0.81[ASN][1000 genomes]
rs3763197	0.83[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs3857503	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857504	0.90[JPT][hapmap]
rs3904720	0.90[JPT][hapmap]
rs4263561	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709713	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4709716	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4709717	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs55779730	0.89[ASN][1000 genomes]
rs56062115	0.85[ASN][1000 genomes]
rs6455897	0.94[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes]
rs6908317	0.81[ASN][1000 genomes]
rs6921172	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6927805	0.81[ASN][1000 genomes]
rs6929436	0.82[ASN][1000 genomes]
rs6931903	0.83[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs6939218	0.89[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs715020	0.89[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap]
rs718878	0.81[ASN][1000 genomes]
rs718879	0.81[ASN][1000 genomes]
rs73013582	0.88[ASN][1000 genomes]
rs73013591	0.82[ASN][1000 genomes]
rs7758706	0.83[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs7772756	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs9346960	0.94[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap]
rs9347760	0.89[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap]
rs9364689	0.94[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap]
rs9364691	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs9364692	0.94[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1791729	chr6:163814557-163836689	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163809800-163819800	Weak transcription	Spleen	Spleen
2	chr6:163809800-163825600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:163813800-163818000	Weak transcription	Liver	Liver
4	chr6:163815000-163818600	Enhancers	Fetal Heart	heart
5	chr6:163815200-163819400	Weak transcription	HSMMtube	muscle
6	chr6:163816600-163820200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:163817400-163818200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:163817400-163818200	Active TSS	Brain Angular Gyrus	brain
9	chr6:163817400-163818200	Active TSS	Brain Cingulate Gyrus	brain
10	chr6:163817400-163818400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:163817400-163818400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:163817400-163818400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:163817400-163818400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr6:163817400-163818600	Active TSS	Fetal Brain Female	brain
15	chr6:163817600-163818000	Active TSS	H9 Cell Line	embryonic stem cell
16	chr6:163817600-163818000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:163817600-163818000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:163817600-163818000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:163817600-163818000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
20	chr6:163817600-163818000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:163817600-163818000	Flanking Active TSS	Colon Smooth Muscle	Colon
22	chr6:163817600-163818000	Enhancers	Placenta	Placenta
23	chr6:163817600-163818000	Flanking Active TSS	Right Atrium	heart
24	chr6:163817600-163818000	Active TSS	Right Ventricle	heart
25	chr6:163817600-163818000	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr6:163817600-163818000	Bivalent Enhancer	K562	blood
27	chr6:163817600-163818200	Active TSS	H1 Cell Line	embryonic stem cell
28	chr6:163817600-163818200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:163817600-163818200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:163817600-163818200	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr6:163817600-163818200	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr6:163817600-163818200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr6:163817600-163818200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
34	chr6:163817600-163818200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
35	chr6:163817600-163818200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:163817600-163818200	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr6:163817600-163818200	Active TSS	Aorta	Aorta
38	chr6:163817600-163818200	Active TSS	Brain Germinal Matrix	brain
39	chr6:163817600-163818200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:163817600-163818200	Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr6:163817600-163818200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr6:163817600-163818200	Flanking Active TSS	Fetal Brain Male	brain
43	chr6:163817600-163818200	Active TSS	Fetal Kidney	kidney
44	chr6:163817600-163818200	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr6:163817600-163818200	Flanking Active TSS	Fetal Muscle Trunk	muscle
46	chr6:163817600-163818200	Active TSS	Rectal Smooth Muscle	rectum
47	chr6:163817600-163818200	Enhancers	GM12878-XiMat	blood
48	chr6:163817600-163818200	Flanking Active TSS	HUVEC	blood vessel
49	chr6:163817600-163818200	Flanking Active TSS	NH-A	brain
50	chr6:163817600-163818200	Flanking Active TSS	NHEK	skin

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