Variant report

Variant	rs1764020
Chromosome Location	chr6:163804967-163804968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163799700..163801284-chr6:163804294..163805880,2	MCF-7	breast:
2	chr6:163799290..163800994-chr6:163802923..163805842,2	K562	blood:
3	chr6:163764724..163766435-chr6:163803749..163805283,2	K562	blood:
4	chr6:163804907..163807228-chr6:163823895..163826768,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11760168	0.91[ASN][1000 genomes]
rs11962088	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13202116	0.94[ASN][1000 genomes]
rs13202733	0.97[ASN][1000 genomes]
rs13204052	0.97[ASN][1000 genomes]
rs1336223	0.86[ASN][1000 genomes]
rs1336224	0.86[ASN][1000 genomes]
rs1336225	0.86[ASN][1000 genomes]
rs1414724	0.84[ASN][1000 genomes]
rs1591536	0.84[ASN][1000 genomes]
rs16894934	0.85[ASN][1000 genomes]
rs16895015	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs1737319	0.83[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs1737321	0.88[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1737322	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs1737324	0.89[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap]
rs1737328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17591955	0.88[CHB][hapmap]
rs1764009	0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1764010	0.89[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap]
rs1764011	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs1764015	0.84[ASN][1000 genomes]
rs1764019	0.84[ASN][1000 genomes]
rs2064224	0.90[ASN][1000 genomes]
rs2064226	0.86[ASN][1000 genomes]
rs2064227	0.89[ASN][1000 genomes]
rs2064230	0.82[ASN][1000 genomes]
rs2065857	0.85[ASN][1000 genomes]
rs2143358	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2294698	0.88[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap]
rs2294703	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs2294706	0.88[CHB][hapmap];0.82[CHD][hapmap];0.84[JPT][hapmap]
rs2294709	0.88[CHB][hapmap];0.82[CHD][hapmap];0.84[JPT][hapmap]
rs2784872	0.86[ASN][1000 genomes]
rs2784875	0.86[ASN][1000 genomes]
rs3756879	0.82[CHB][hapmap]
rs3763197	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs3857503	0.87[ASN][1000 genomes]
rs3857504	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs3904720	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs4263561	0.94[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4709713	0.92[ASN][1000 genomes]
rs4709714	0.82[ASN][1000 genomes]
rs4709716	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs4709717	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs56062115	0.82[ASN][1000 genomes]
rs6455897	0.88[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6908317	0.86[ASN][1000 genomes]
rs6921172	0.91[ASN][1000 genomes]
rs6927805	0.86[ASN][1000 genomes]
rs6929436	0.84[ASN][1000 genomes]
rs6931903	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs6939218	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs715020	0.83[CHB][hapmap];0.82[CHD][hapmap];0.84[JPT][hapmap]
rs718878	0.84[ASN][1000 genomes]
rs718879	0.84[ASN][1000 genomes]
rs7758706	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs7772756	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs9346960	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs9347760	0.83[CHB][hapmap]
rs9364687	0.87[ASN][1000 genomes]
rs9364689	0.88[CHB][hapmap];0.82[CHD][hapmap];0.84[JPT][hapmap]
rs9364691	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs9364692	0.88[CHB][hapmap];0.82[CHD][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1764020	QKI	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163791000-163813000	Weak transcription	Right Atrium	heart
2	chr6:163802600-163807600	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:163802600-163812800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:163803000-163807200	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:163803200-163812600	Weak transcription	Fetal Heart	heart
6	chr6:163803400-163807800	Weak transcription	HepG2	liver
7	chr6:163804800-163805200	Enhancers	Hela-S3	cervix
8	chr6:163804800-163805800	Enhancers	NHEK	skin

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