Variant report

Variant	rs34720350
Chromosome Location	chr6:163791080-163791081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163788145..163792575-chr6:163834513..163836469,4	K562	blood:
2	chr6:163787459..163789359-chr6:163790484..163793224,2	K562	blood:
3	chr6:163790875..163792483-chr6:163795194..163796907,2	K562	blood:

Variant related genes	Relation type
ENSG00000112531	Chromatin interaction
ENSG00000270419	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11760168	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13193898	0.83[ASN][1000 genomes]
rs2744419	0.80[ASN][1000 genomes]
rs6455897	0.91[EUR][1000 genomes]
rs9356112	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163777400-163791400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:163783800-163791800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:163787600-163791800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:163789000-163791600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:163789600-163792600	Enhancers	Brain Hippocampus Middle	brain
6	chr6:163789800-163791400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:163789800-163791600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:163789800-163791800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:163790000-163791200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:163790200-163791400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:163790400-163791400	Weak transcription	Brain Angular Gyrus	brain
12	chr6:163790400-163791400	Weak transcription	Brain Anterior Caudate	brain
13	chr6:163790600-163791200	Enhancers	Spleen	Spleen
14	chr6:163790800-163791200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:163790800-163791200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr6:163790800-163791200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:163790800-163792000	Enhancers	Fetal Muscle Trunk	muscle
18	chr6:163790800-163792200	Enhancers	Lung	lung
19	chr6:163791000-163791400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:163791000-163791600	Weak transcription	Brain Substantia Nigra	brain
21	chr6:163791000-163792000	Weak transcription	Right Ventricle	heart
22	chr6:163791000-163792800	Enhancers	Brain Cingulate Gyrus	brain
23	chr6:163791000-163792800	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr6:163791000-163794200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:163791000-163794200	Weak transcription	Left Ventricle	heart
26	chr6:163791000-163813000	Weak transcription	Right Atrium	heart

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