Variant report

Variant	rs17373941
Chromosome Location	chr13:89974191-89974192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs186391	1.00[CHB][hapmap]
rs1867556	1.00[CHB][hapmap]
rs28368654	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs314553	1.00[CHB][hapmap]
rs432539	1.00[CHB][hapmap]
rs72630519	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72630520	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72630554	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72630556	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72630558	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72630560	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72630561	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72630562	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72630563	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72630564	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72630565	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7995618	0.91[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832676	chr13:89941212-90090424	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900859	chr13:89944833-90036166	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89972400-89979400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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