Variant report

Variant	rs72630563
Chromosome Location	chr13:90010259-90010260
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:90007666..90009633-chr13:90010115..90012279,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1157962	1.00[ASN][1000 genomes]
rs1373729	1.00[ASN][1000 genomes]
rs1412089	1.00[ASN][1000 genomes]
rs1412090	1.00[ASN][1000 genomes]
rs170238	1.00[ASN][1000 genomes]
rs17373941	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs182608	1.00[ASN][1000 genomes]
rs1854904	1.00[ASN][1000 genomes]
rs186391	1.00[ASN][1000 genomes]
rs1867556	1.00[ASN][1000 genomes]
rs2120872	1.00[ASN][1000 genomes]
rs2166202	1.00[ASN][1000 genomes]
rs221317	1.00[ASN][1000 genomes]
rs28368654	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs314529	1.00[ASN][1000 genomes]
rs314540	1.00[ASN][1000 genomes]
rs314541	1.00[ASN][1000 genomes]
rs314542	1.00[ASN][1000 genomes]
rs314544	1.00[ASN][1000 genomes]
rs314553	1.00[ASN][1000 genomes]
rs314556	1.00[ASN][1000 genomes]
rs314557	1.00[ASN][1000 genomes]
rs314558	1.00[ASN][1000 genomes]
rs314559	1.00[ASN][1000 genomes]
rs314561	1.00[ASN][1000 genomes]
rs314567	1.00[ASN][1000 genomes]
rs314568	1.00[ASN][1000 genomes]
rs364362	1.00[ASN][1000 genomes]
rs367111	1.00[ASN][1000 genomes]
rs368814	1.00[ASN][1000 genomes]
rs392223	1.00[ASN][1000 genomes]
rs393327	1.00[ASN][1000 genomes]
rs393546	1.00[ASN][1000 genomes]
rs412365	1.00[ASN][1000 genomes]
rs415309	1.00[ASN][1000 genomes]
rs432539	1.00[ASN][1000 genomes]
rs72630519	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72630520	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72630554	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72630556	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72630558	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72630560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72630561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72630562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72630564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72630565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7334436	1.00[ASN][1000 genomes]
rs9301545	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832676	chr13:89941212-90090424	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900859	chr13:89944833-90036166	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1044807	chr13:89991827-90263328	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1039775	chr13:89995537-90260944	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv900860	chr13:90008941-90259291	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90005000-90010600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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