Variant report

Variant	rs17377295
Chromosome Location	chr1:61710179-61710180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61709999..61711668-chr1:61722903..61725455,2	K562	blood:
2	chr1:61705176..61707440-chr1:61708242..61713126,6	K562	blood:
3	chr1:61687117..61688751-chr1:61709557..61711525,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17121798	0.80[CEU][hapmap]
rs17121835	0.80[CEU][hapmap]
rs17121845	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17305204	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17305218	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17311684	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17311740	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17377134	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17377148	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17377218	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17377232	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17377267	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17377274	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17377281	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17377351	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74086705	0.91[EUR][1000 genomes]
rs74090339	0.91[EUR][1000 genomes]
rs74090351	0.91[EUR][1000 genomes]
rs868110	0.80[CEU][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849929	chr1:61684084-61714142	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv994970	chr1:61693951-62199657	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1006142	chr1:61696142-62119763	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv534980	chr1:61696142-62119763	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv916868	chr1:61700430-62119762	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1001052	chr1:61702011-62090670	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv817402	chr1:61703965-62119762	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1010797	chr1:61703966-62125970	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	esv3320054	chr1:61710132-61710664	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61680000-61720200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:61703600-61713600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:61704600-61713400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:61704600-61713600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:61705400-61715200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:61706600-61710400	Enhancers	Liver	Liver
7	chr1:61706800-61710400	Enhancers	HepG2	liver
8	chr1:61707000-61710200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:61707200-61713400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:61707400-61718800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr1:61707400-61718800	Weak transcription	Gastric	stomach
12	chr1:61707600-61710200	Enhancers	Fetal Heart	heart
13	chr1:61707600-61719000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr1:61707800-61710400	Enhancers	Brain Anterior Caudate	brain
15	chr1:61707800-61710400	Enhancers	Fetal Brain Male	brain
16	chr1:61707800-61718600	Weak transcription	Stomach Mucosa	stomach
17	chr1:61708000-61710200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr1:61708000-61710400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr1:61708000-61710400	Enhancers	Rectal Smooth Muscle	rectum
20	chr1:61708000-61710800	Enhancers	Fetal Lung	lung
21	chr1:61708000-61712200	Enhancers	Colon Smooth Muscle	Colon
22	chr1:61708000-61712800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:61708000-61713600	Weak transcription	A549	lung
24	chr1:61708000-61718800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr1:61708000-61720400	Weak transcription	Colonic Mucosa	Colon
26	chr1:61708200-61710600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:61709000-61710800	Weak transcription	Brain Germinal Matrix	brain
28	chr1:61709400-61710400	Enhancers	Fetal Stomach	stomach
29	chr1:61709400-61710400	Enhancers	HUVEC	blood vessel
30	chr1:61709400-61710600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:61709400-61710600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:61709400-61710600	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr1:61709600-61710200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr1:61709600-61710200	Enhancers	Brain Angular Gyrus	brain
35	chr1:61709600-61710200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr1:61709600-61710400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:61709600-61710800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr1:61709600-61710800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr1:61709600-61711200	Enhancers	Brain Hippocampus Middle	brain
40	chr1:61709600-61719000	Weak transcription	Lung	lung
41	chr1:61709800-61710200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr1:61709800-61710200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:61709800-61710200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:61709800-61710200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr1:61709800-61710200	Enhancers	Aorta	Aorta
46	chr1:61709800-61710200	Enhancers	Esophagus	oesophagus
47	chr1:61709800-61710200	Enhancers	Fetal Muscle Leg	muscle
48	chr1:61709800-61710200	Enhancers	Left Ventricle	heart
49	chr1:61709800-61710200	Enhancers	Ovary	ovary
50	chr1:61709800-61710200	Enhancers	Pancreas	Pancrea

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