The 2.0 version of rSNPBase

Variant report

Variant rs17121798
Chromosome Location chr1:61675857-61675858
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61664600-61678400 Weak transcription Fetal Muscle Trunk muscle
2 chr1:61664800-61679200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
3 chr1:61665000-61683800 Weak transcription Brain Germinal Matrix brain
4 chr1:61669200-61681400 Weak transcription Stomach Smooth Muscle stomach
5 chr1:61669200-61685800 Weak transcription Fetal Brain Female brain
6 chr1:61669200-61692400 Weak transcription Fetal Muscle Leg muscle
7 chr1:61669400-61676400 Weak transcription Rectal Smooth Muscle rectum
8 chr1:61669400-61678400 Weak transcription NHEK skin
9 chr1:61669400-61679400 Weak transcription Pancreas Pancrea
10 chr1:61669400-61683800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:61669400-61691800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr1:61669600-61685800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr1:61669600-61686000 Weak transcription Brain Inferior Temporal Lobe brain
14 chr1:61669600-61692400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr1:61669800-61678400 Weak transcription Adipose Nuclei Adipose
16 chr1:61670000-61677400 Weak transcription Fetal Stomach stomach
17 chr1:61670400-61681400 Weak transcription Ovary ovary
18 chr1:61670800-61680400 Weak transcription Fetal Intestine Small intestine
19 chr1:61671200-61683200 Weak transcription K562 blood
20 chr1:61674000-61678400 Weak transcription Left Ventricle heart
21 chr1:61674000-61679200 Weak transcription HepG2 liver
22 chr1:61674200-61686200 Weak transcription Brain Cingulate Gyrus brain
23 chr1:61674400-61679800 Weak transcription Fetal Lung lung
24 chr1:61674800-61676000 Weak transcription Brain Substantia Nigra brain
25 chr1:61674800-61676000 Weak transcription Fetal Brain Male brain
26 chr1:61674800-61678200 Weak transcription Liver Liver
27 chr1:61674800-61678400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr1:61674800-61683800 Weak transcription Psoas Muscle Psoas
29 chr1:61674800-61685000 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr1:61675000-61676400 Weak transcription Brain Hippocampus Middle brain
31 chr1:61675400-61676200 Weak transcription Aorta Aorta
32 chr1:61675600-61676000 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr1:61675600-61676400 Enhancers A549 lung
34 chr1:61675600-61676600 Enhancers Brain Anterior Caudate brain
35 chr1:61675600-61676800 Enhancers Colon Smooth Muscle Colon
36 chr1:61675800-61676000 Enhancers Brain Angular Gyrus brain
37 chr1:61675800-61676400 Enhancers HMEC breast
38 chr1:61675800-61676600 Enhancers Duodenum Smooth Muscle Duodenum
39 chr1:61675800-61676800 Enhancers Skeletal Muscle Female skeletal muscle
40 chr1:61675800-61677000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015