The 2.0 version of rSNPBase

Variant report

Variant rs55878063
Chromosome Location chr1:61671909-61671910
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61664600-61672600 Weak transcription Left Ventricle heart
2 chr1:61664600-61678400 Weak transcription Fetal Muscle Trunk muscle
3 chr1:61664800-61679200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr1:61665000-61672000 Weak transcription Cortex derived primary cultured neurospheres brain
5 chr1:61665000-61683800 Weak transcription Brain Germinal Matrix brain
6 chr1:61667600-61674200 Weak transcription HUVEC blood vessel
7 chr1:61669200-61681400 Weak transcription Stomach Smooth Muscle stomach
8 chr1:61669200-61685800 Weak transcription Fetal Brain Female brain
9 chr1:61669200-61692400 Weak transcription Fetal Muscle Leg muscle
10 chr1:61669400-61672400 Weak transcription Brain Cingulate Gyrus brain
11 chr1:61669400-61673200 Weak transcription Aorta Aorta
12 chr1:61669400-61673600 Weak transcription Brain Substantia Nigra brain
13 chr1:61669400-61673800 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr1:61669400-61674000 Weak transcription Fetal Brain Male brain
15 chr1:61669400-61674400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr1:61669400-61676400 Weak transcription Rectal Smooth Muscle rectum
17 chr1:61669400-61678400 Weak transcription NHEK skin
18 chr1:61669400-61679400 Weak transcription Pancreas Pancrea
19 chr1:61669400-61683800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:61669400-61691800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr1:61669600-61673600 Weak transcription Fetal Lung lung
22 chr1:61669600-61675800 Weak transcription Brain Angular Gyrus brain
23 chr1:61669600-61685800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr1:61669600-61686000 Weak transcription Brain Inferior Temporal Lobe brain
25 chr1:61669600-61692400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr1:61669800-61672400 Weak transcription Brain Anterior Caudate brain
27 chr1:61669800-61674600 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr1:61669800-61675800 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr1:61669800-61678400 Weak transcription Adipose Nuclei Adipose
30 chr1:61670000-61673400 Weak transcription Colon Smooth Muscle Colon
31 chr1:61670000-61677400 Weak transcription Fetal Stomach stomach
32 chr1:61670200-61673000 Weak transcription HepG2 liver
33 chr1:61670400-61681400 Weak transcription Ovary ovary
34 chr1:61670800-61672400 Weak transcription Brain Hippocampus Middle brain
35 chr1:61670800-61680400 Weak transcription Fetal Intestine Small intestine
36 chr1:61671200-61683200 Weak transcription K562 blood
37 chr1:61671400-61672600 Weak transcription Liver Liver
38 chr1:61671600-61672600 Weak transcription Psoas Muscle Psoas

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Last update: Aug 31, 2015