Variant report

Variant	rs9970076
Chromosome Location	chr1:61683556-61683557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:61676278..61681028-chr1:61681460..61685065,4	K562	blood:
2	chr1:61678184..61681028-chr1:61682728..61685065,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11806791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17121798	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17121833	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17121835	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17121841	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17121845	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs17305204	0.80[CEU][hapmap]
rs17305218	0.80[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap]
rs17311684	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs17311740	0.80[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap]
rs17377134	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs17377148	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17377218	0.80[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap]
rs17377267	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs17377274	0.80[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs17377281	0.82[EUR][1000 genomes]
rs17377351	0.80[CEU][hapmap]
rs333143	0.85[YRI][hapmap]
rs333146	0.81[ASW][hapmap];0.85[YRI][hapmap]
rs55878063	0.87[EUR][1000 genomes]
rs59708846	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61593957	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72929847	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74086705	0.82[EUR][1000 genomes]
rs74090327	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090339	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74090351	0.82[EUR][1000 genomes]
rs7515011	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs868110	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9970140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61665000-61683800	Weak transcription	Brain Germinal Matrix	brain
2	chr1:61669200-61685800	Weak transcription	Fetal Brain Female	brain
3	chr1:61669200-61692400	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:61669400-61683800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:61669400-61691800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:61669600-61685800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:61669600-61686000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr1:61669600-61692400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:61674200-61686200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:61674800-61683800	Weak transcription	Psoas Muscle	Psoas
11	chr1:61674800-61685000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:61676600-61685800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:61676600-61690000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:61677600-61692400	Weak transcription	Esophagus	oesophagus
15	chr1:61677800-61685600	Weak transcription	Fetal Stomach	stomach
16	chr1:61679200-61692200	Weak transcription	NHEK	skin
17	chr1:61679600-61684400	Enhancers	Liver	Liver
18	chr1:61679600-61685800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:61679800-61683800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr1:61679800-61687400	Weak transcription	Fetal Brain Male	brain
21	chr1:61680000-61720200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr1:61680800-61687400	Weak transcription	A549	lung
23	chr1:61681800-61686000	Weak transcription	Brain Substantia Nigra	brain
24	chr1:61682000-61686200	Weak transcription	Brain Anterior Caudate	brain
25	chr1:61682000-61687400	Weak transcription	Fetal Lung	lung
26	chr1:61682000-61690200	Weak transcription	Ovary	ovary
27	chr1:61682000-61692400	Weak transcription	Left Ventricle	heart
28	chr1:61682000-61706800	Weak transcription	Gastric	stomach
29	chr1:61682200-61686000	Weak transcription	HepG2	liver
30	chr1:61682200-61691800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr1:61683000-61684200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:61683200-61683600	Enhancers	Brain Hippocampus Middle	brain
33	chr1:61683200-61683800	Enhancers	Colon Smooth Muscle	Colon
34	chr1:61683200-61683800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr1:61683200-61684000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr1:61683200-61684000	Enhancers	Adipose Nuclei	Adipose
37	chr1:61683200-61684000	Enhancers	Fetal Heart	heart
38	chr1:61683200-61684000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr1:61683200-61684400	ZNF genes & repeats	K562	blood
40	chr1:61683400-61683600	Enhancers	Right Ventricle	heart
41	chr1:61683400-61683800	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links