Variant report

Variant	rs17379489
Chromosome Location	chr2:10394348-10394349
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:10393127..10396055-chr2:10588104..10589824,2	K562	blood:
2	chr2:10393161..10396056-chr2:10408396..10410670,2	K562	blood:
3	chr2:10392978..10395026-chr2:10400491..10403143,2	K562	blood:
4	chr2:10381793..10384669-chr2:10393531..10396356,3	K562	blood:
5	chr2:10393987..10396865-chr2:10417626..10420147,4	K562	blood:
6	chr2:10393925..10398726-chr2:10441942..10445686,4	K562	blood:
7	chr2:10392904..10395765-chr2:10528915..10531340,2	K562	blood:
8	chr2:10393158..10395246-chr2:10447953..10450764,2	K562	blood:
9	chr2:10382224..10385160-chr2:10393761..10396666,3	K562	blood:
10	chr2:10393925..10395521-chr2:10443524..10445686,2	K562	blood:
11	chr2:10392892..10396055-chr2:10586861..10589824,3	K562	blood:
12	chr2:10390216..10392026-chr2:10392709..10394870,2	K562	blood:
13	chr2:10393816..10396195-chr2:10396463..10398595,2	MCF-7	breast:
14	chr2:10392994..10395994-chr2:10546875..10548738,3	K562	blood:
15	chr2:10382805..10384733-chr2:10392975..10395237,2	MCF-7	breast:
16	chr2:10393383..10395595-chr2:10425523..10427994,2	MCF-7	breast:
17	chr2:10392294..10394554-chr2:10441498..10444201,2	MCF-7	breast:
18	chr2:10393518..10395785-chr2:10396578..10398775,3	K562	blood:
19	chr2:10392345..10395188-chr2:10407318..10409008,2	K562	blood:
20	chr2:10394157..10396963-chr2:10408123..10409745,2	MCF-7	breast:
21	chr2:10393709..10396218-chr2:10398784..10401137,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000115758	Chromatin interaction
ENSG00000206633	Chromatin interaction
ENSG00000115756	Chromatin interaction
ENSG00000257135	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11677554	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11688174	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11690100	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11695911	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11888584	0.89[ASN][1000 genomes]
rs1468782	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34104566	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56306950	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73914014	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7561415	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7576926	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7580449	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7583344	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7587187	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756904	chr2:10347142-10406706	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv2759024	chr2:10347142-10406706	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
4	nsv873639	chr2:10372061-10475308	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv873640	chr2:10385097-10422342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv527868	chr2:10394082-10395944	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10391600-10394400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:10392600-10395800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr2:10392800-10394400	Enhancers	Placenta	Placenta
4	chr2:10392800-10399200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:10392800-10407600	Weak transcription	Gastric	stomach
6	chr2:10393000-10395000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr2:10393000-10395200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr2:10393400-10397800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr2:10393600-10394800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:10393600-10395200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr2:10393800-10394400	Enhancers	Lung	lung
12	chr2:10393800-10394800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:10393800-10394800	Weak transcription	Spleen	Spleen
14	chr2:10393800-10395000	Enhancers	Fetal Muscle Leg	muscle
15	chr2:10393800-10395600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:10393800-10396200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr2:10393800-10396200	Enhancers	Hela-S3	cervix
18	chr2:10394200-10394600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:10394200-10395200	Enhancers	Fetal Intestine Large	intestine
20	chr2:10394200-10395400	Flanking Active TSS	K562	blood
21	chr2:10394200-10395600	Enhancers	A549	lung

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