Variant report

Variant	rs7561415
Chromosome Location	chr2:10396544-10396545
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10394552..10396984-chr2:10589964..10592378,2	K562	blood:
2	chr2:10393816..10396195-chr2:10396463..10398595,2	MCF-7	breast:
3	chr2:10393987..10396865-chr2:10417626..10420147,4	K562	blood:
4	chr2:10393925..10398726-chr2:10441942..10445686,4	K562	blood:
5	chr2:10395441..10397199-chr2:10398959..10400526,2	K562	blood:
6	chr2:10390359..10393912-chr2:10395616..10397789,3	MCF-7	breast:
7	chr2:10382224..10385160-chr2:10393761..10396666,3	K562	blood:
8	chr2:10396329..10399682-chr2:10404983..10407952,4	K562	blood:
9	chr2:10261572..10264227-chr2:10394893..10397118,2	MCF-7	breast:
10	chr2:10391362..10392951-chr2:10396455..10398148,2	MCF-7	breast:
11	chr2:10394157..10396963-chr2:10408123..10409745,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11677113	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11690100	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11695911	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs17379489	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7587187	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756904	chr2:10347142-10406706	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv2759024	chr2:10347142-10406706	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
4	nsv873639	chr2:10372061-10475308	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv873640	chr2:10385097-10422342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10392800-10399200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:10392800-10407600	Weak transcription	Gastric	stomach
3	chr2:10393400-10397800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr2:10394600-10397200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:10394800-10396600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:10394800-10396800	Enhancers	Spleen	Spleen
7	chr2:10395000-10396600	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr2:10395200-10399800	Weak transcription	Fetal Intestine Large	intestine
9	chr2:10395200-10400400	Weak transcription	HSMM	muscle
10	chr2:10395200-10401200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:10395400-10396800	Weak transcription	HSMMtube	muscle
12	chr2:10395600-10398800	Weak transcription	A549	lung
13	chr2:10395800-10396600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:10396000-10397200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:10396200-10397000	Enhancers	Primary hematopoietic stem cells	blood
16	chr2:10396200-10400200	Weak transcription	Hela-S3	cervix
17	chr2:10396400-10397000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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