Variant report

Variant	rs1738212
Chromosome Location	chr6:38789598-38789599
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38781958..38783786-chr6:38788204..38790134,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1008227	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1018437	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1564377	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1629877	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678682	0.90[EUR][1000 genomes]
rs1678690	0.93[EUR][1000 genomes]
rs1678691	0.92[EUR][1000 genomes]
rs1678692	0.92[EUR][1000 genomes]
rs1678693	0.93[EUR][1000 genomes]
rs1678694	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1678695	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678696	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678697	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1678698	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678699	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678700	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678701	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678702	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678703	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1678706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678708	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1678712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678717	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1678742	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1738199	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1738203	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1738211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1738215	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1738216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1738217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1738218	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1738219	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1738220	0.93[EUR][1000 genomes]
rs1738221	0.93[EUR][1000 genomes]
rs1738231	0.90[EUR][1000 genomes]
rs1738241	0.88[EUR][1000 genomes]
rs2061907	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2179711	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2179712	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2179713	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4501424	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6458073	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6458074	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6458075	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6458076	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6458077	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6458078	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6919465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928952	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6934064	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7748684	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7757460	0.86[EUR][1000 genomes]
rs7772148	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs874808	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9296265	0.91[EUR][1000 genomes]
rs9349100	0.91[EUR][1000 genomes]
rs9369085	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9369087	0.91[EUR][1000 genomes]
rs9380787	0.88[EUR][1000 genomes]
rs9380788	0.86[EUR][1000 genomes]
rs9380789	0.91[EUR][1000 genomes]
rs9380795	0.86[EUR][1000 genomes]
rs9394544	0.88[EUR][1000 genomes]
rs9394545	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs984523	0.98[ASN][1000 genomes]
rs984524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs984525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830642	chr6:38645056-38800657	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv470814	chr6:38728142-38790149	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38766800-38824400	Weak transcription	K562	blood
2	chr6:38789400-38789800	Enhancers	Fetal Muscle Leg	muscle

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