Variant report

Variant	rs1738224
Chromosome Location	chr6:38779963-38779964
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1615441	0.88[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1616105	0.88[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1617807	0.85[EUR][1000 genomes]
rs1618774	0.88[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1618834	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1622275	0.91[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs1627917	0.85[EUR][1000 genomes]
rs1678664	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs1678666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1678674	0.95[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs1678676	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1678678	0.82[YRI][hapmap]
rs1678686	0.91[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs1678710	0.87[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678711	0.88[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678716	0.88[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678719	0.87[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678720	0.87[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678721	0.88[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678722	0.87[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678724	0.88[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678728	0.87[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678729	0.87[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678730	0.85[EUR][1000 genomes]
rs1678731	0.85[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678732	0.88[CEU][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678733	0.88[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678734	0.88[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678735	0.88[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1678737	0.87[CEU][hapmap];0.94[JPT][hapmap]
rs1678738	0.87[CEU][hapmap];0.87[JPT][hapmap]
rs1678741	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs1678743	0.83[JPT][hapmap]
rs16891139	0.83[JPT][hapmap]
rs1738188	0.82[JPT][hapmap]
rs1738189	0.87[CEU][hapmap];0.94[JPT][hapmap]
rs1738190	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs1738191	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs1738193	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs1738194	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs1738198	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs1738200	0.88[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1738202	0.84[EUR][1000 genomes]
rs1738206	0.88[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1738207	0.88[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1738208	0.85[EUR][1000 genomes]
rs1738209	0.88[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1738210	0.81[CEU][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs1738213	0.85[EUR][1000 genomes]
rs1738214	0.85[EUR][1000 genomes]
rs1738226	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs1738233	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1738234	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1738237	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1738242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1738246	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1738249	0.91[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs1738254	0.88[YRI][hapmap]
rs1738262	0.87[YRI][hapmap]
rs6912563	0.90[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs9470943	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830642	chr6:38645056-38800657	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv602959	chr6:38728142-38786528	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv470814	chr6:38728142-38790149	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv462916	chr6:38747770-38782401	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv602960	chr6:38747770-38782401	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38766800-38824400	Weak transcription	K562	blood

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