Variant report

Variant	rs1738188
Chromosome Location	chr6:38816015-38816016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38813265..38816025-chr6:38831450..38834352,2	K562	blood:

Variant related genes	Relation type
ENSG00000124721	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1615441	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];0.92[ASN][1000 genomes]
rs1616105	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.92[ASN][1000 genomes]
rs1617807	0.92[ASN][1000 genomes]
rs1618774	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.92[ASN][1000 genomes]
rs1622342	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1627917	0.90[ASN][1000 genomes]
rs1678664	0.81[JPT][hapmap]
rs1678666	0.82[JPT][hapmap]
rs1678674	0.85[CEU][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs1678710	1.00[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs1678711	1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs1678716	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs1678719	0.82[ASW][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[LWK][hapmap];0.81[MKK][hapmap];0.86[YRI][hapmap];0.91[ASN][1000 genomes]
rs1678720	0.82[ASW][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[LWK][hapmap];0.86[YRI][hapmap];0.91[ASN][1000 genomes]
rs1678721	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.93[ASN][1000 genomes]
rs1678722	1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.93[ASN][1000 genomes]
rs1678724	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.93[ASN][1000 genomes]
rs1678726	0.87[ASN][1000 genomes]
rs1678728	0.82[ASW][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[LWK][hapmap];0.90[MKK][hapmap];0.86[YRI][hapmap];0.90[ASN][1000 genomes]
rs1678729	0.82[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.83[LWK][hapmap];0.90[MKK][hapmap];0.86[YRI][hapmap];0.92[ASN][1000 genomes]
rs1678730	0.92[ASN][1000 genomes]
rs1678731	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[YRI][hapmap];0.94[ASN][1000 genomes]
rs1678732	1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs1678733	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs1678734	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs1678735	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes]
rs1678737	0.82[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.83[LWK][hapmap];0.90[MKK][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1678738	1.00[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap];0.94[ASN][1000 genomes]
rs1678739	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1678740	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1678741	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1678743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678744	0.93[LWK][hapmap];0.89[MKK][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes]
rs1678746	0.81[AFR][1000 genomes]
rs16891139	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1738186	0.90[AFR][1000 genomes]
rs1738187	0.95[YRI][hapmap];0.90[AFR][1000 genomes]
rs1738189	1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs1738190	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs1738191	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1738193	0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.87[ASN][1000 genomes]
rs1738194	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1738195	0.86[ASN][1000 genomes]
rs1738196	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1738197	0.94[ASN][1000 genomes]
rs1738198	1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1738200	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.94[ASN][1000 genomes]
rs1738202	0.87[ASN][1000 genomes]
rs1738206	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.93[ASN][1000 genomes]
rs1738207	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.93[ASN][1000 genomes]
rs1738208	0.91[ASN][1000 genomes]
rs1738209	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.91[ASN][1000 genomes]
rs1738210	1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs1738213	0.90[ASN][1000 genomes]
rs1738214	0.87[ASN][1000 genomes]
rs1738224	0.82[JPT][hapmap]
rs1738233	0.82[JPT][hapmap]
rs1738242	0.82[JPT][hapmap]
rs1738252	0.85[CEU][hapmap]
rs3823429	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[TSI][hapmap]
rs4452640	1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[TSI][hapmap]
rs4711561	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[TSI][hapmap]
rs7757442	1.00[CEU][hapmap]
rs9357285	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380803	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38766800-38824400	Weak transcription	K562	blood
2	chr6:38804600-38821000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:38812600-38821000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:38814400-38816800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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