Variant report

Variant	rs9380803
Chromosome Location	chr6:38852211-38852212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38851556..38854549-chr6:38855510..38859290,4	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1615441	1.00[CHB][hapmap]
rs1616105	1.00[CHB][hapmap]
rs1618774	1.00[CHB][hapmap]
rs1678664	0.81[JPT][hapmap]
rs1678674	0.85[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap]
rs1678710	1.00[CHB][hapmap]
rs1678711	1.00[CHB][hapmap]
rs1678716	1.00[CHB][hapmap]
rs1678719	1.00[CHB][hapmap]
rs1678720	1.00[CHB][hapmap]
rs1678721	1.00[CHB][hapmap]
rs1678722	1.00[CHB][hapmap]
rs1678724	1.00[CHB][hapmap]
rs1678728	1.00[CHB][hapmap]
rs1678729	1.00[CHB][hapmap]
rs1678731	1.00[CHB][hapmap]
rs1678732	1.00[CHB][hapmap]
rs1678733	1.00[CHB][hapmap]
rs1678734	1.00[CHB][hapmap]
rs1678735	1.00[CHB][hapmap]
rs1678737	1.00[CHB][hapmap]
rs1678738	1.00[CHB][hapmap]
rs1678741	1.00[CHB][hapmap]
rs1678743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs16891139	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1738188	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1738189	1.00[CHB][hapmap]
rs1738190	1.00[CHB][hapmap]
rs1738191	1.00[CHB][hapmap]
rs1738193	0.90[CHB][hapmap]
rs1738194	1.00[CHB][hapmap]
rs1738198	1.00[CHB][hapmap]
rs1738200	1.00[CHB][hapmap]
rs1738206	1.00[CHB][hapmap]
rs1738207	1.00[CHB][hapmap]
rs1738209	1.00[CHB][hapmap]
rs1738210	1.00[CHB][hapmap]
rs1738252	0.85[CEU][hapmap]
rs3823429	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4452640	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4711561	1.00[CEU][hapmap]
rs58580420	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7757442	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9357285	1.00[CEU][hapmap];0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9380803	DNAH8	cis	multi-tissue	Pritchard

Chromatin state (count:0 , 50 per page) page:

No data

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