Variant report

Variant	rs7757442
Chromosome Location	chr6:38870166-38870167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38868758..38870496-chr6:38873013..38875836,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1615441	0.84[CHB][hapmap]
rs1618774	0.80[CHB][hapmap]
rs1678674	0.85[CEU][hapmap]
rs1678711	0.80[CHB][hapmap]
rs1678716	0.80[CHB][hapmap]
rs1678721	0.80[CHB][hapmap]
rs1678724	0.80[CHB][hapmap]
rs1678731	0.84[CHB][hapmap]
rs1678732	0.80[CHB][hapmap]
rs1678733	0.80[CHB][hapmap]
rs1678734	0.80[CHB][hapmap]
rs1678735	0.80[CHB][hapmap]
rs1678741	0.80[CHB][hapmap]
rs1678743	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs16891139	0.82[CEU][hapmap];0.80[CHB][hapmap]
rs16891271	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs1738188	1.00[CEU][hapmap]
rs1738191	0.80[CHB][hapmap]
rs1738194	0.80[CHB][hapmap]
rs1738198	0.80[CHB][hapmap]
rs1738200	0.80[CHB][hapmap]
rs1738206	0.80[CHB][hapmap]
rs1738207	0.80[CHB][hapmap]
rs1738209	0.80[CHB][hapmap]
rs1738252	0.85[CEU][hapmap]
rs3823429	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4452640	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4711561	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4711565	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs4714199	0.84[CHB][hapmap]
rs58580420	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6458086	0.84[CHB][hapmap]
rs9357285	1.00[CEU][hapmap]
rs9380803	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38869600-38870400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr6:38869600-38870400	Enhancers	H9 Cell Line	embryonic stem cell
3	chr6:38869600-38870400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:38869600-38870400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:38869600-38870600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:38869600-38870600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:38869800-38870200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr6:38869800-38870400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:38870000-38870200	Enhancers	HUES48 Cell Line	embryonic stem cell

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