Variant report

Variant	rs9357285
Chromosome Location	chr6:38821752-38821753
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38819628..38821796-chr6:38823200..38825127,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1615441	0.88[CHB][hapmap];0.91[ASN][1000 genomes]
rs1616105	0.88[CHB][hapmap];0.91[ASN][1000 genomes]
rs1617807	0.91[ASN][1000 genomes]
rs1618774	0.89[CHB][hapmap];0.91[ASN][1000 genomes]
rs1622342	0.92[ASN][1000 genomes]
rs1627917	0.88[ASN][1000 genomes]
rs1678674	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs1678710	0.88[CHB][hapmap];0.91[ASN][1000 genomes]
rs1678711	0.89[CHB][hapmap];0.88[ASN][1000 genomes]
rs1678716	0.89[CHB][hapmap];0.91[ASN][1000 genomes]
rs1678719	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs1678720	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs1678721	0.89[CHB][hapmap];0.91[ASN][1000 genomes]
rs1678722	0.89[CHB][hapmap];0.91[ASN][1000 genomes]
rs1678724	0.89[CHB][hapmap];0.91[ASN][1000 genomes]
rs1678726	0.86[ASN][1000 genomes]
rs1678728	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs1678729	0.88[CHB][hapmap];0.91[ASN][1000 genomes]
rs1678730	0.91[ASN][1000 genomes]
rs1678731	0.89[CHB][hapmap];0.92[ASN][1000 genomes]
rs1678732	0.89[CHB][hapmap];0.92[ASN][1000 genomes]
rs1678733	0.89[CHB][hapmap];0.92[ASN][1000 genomes]
rs1678734	0.89[CHB][hapmap];0.92[ASN][1000 genomes]
rs1678735	0.89[CHB][hapmap];0.92[ASN][1000 genomes]
rs1678737	0.88[CHB][hapmap];0.92[ASN][1000 genomes]
rs1678738	0.87[CHB][hapmap];0.92[ASN][1000 genomes]
rs1678739	0.92[ASN][1000 genomes]
rs1678740	0.92[ASN][1000 genomes]
rs1678741	0.89[CHB][hapmap];0.92[ASN][1000 genomes]
rs1678743	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16891139	0.82[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1738188	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1738189	0.88[CHB][hapmap];0.92[ASN][1000 genomes]
rs1738190	0.88[CHB][hapmap];0.92[ASN][1000 genomes]
rs1738191	0.89[CHB][hapmap];0.92[ASN][1000 genomes]
rs1738193	0.85[ASN][1000 genomes]
rs1738194	0.89[CHB][hapmap];0.92[ASN][1000 genomes]
rs1738195	0.85[ASN][1000 genomes]
rs1738196	0.90[ASN][1000 genomes]
rs1738197	0.92[ASN][1000 genomes]
rs1738198	0.89[CHB][hapmap];0.92[ASN][1000 genomes]
rs1738200	0.89[CHB][hapmap];0.92[ASN][1000 genomes]
rs1738202	0.86[ASN][1000 genomes]
rs1738206	0.89[CHB][hapmap];0.91[ASN][1000 genomes]
rs1738207	0.89[CHB][hapmap];0.91[ASN][1000 genomes]
rs1738208	0.89[ASN][1000 genomes]
rs1738209	0.89[CHB][hapmap];0.89[ASN][1000 genomes]
rs1738210	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs1738213	0.88[ASN][1000 genomes]
rs1738214	0.85[ASN][1000 genomes]
rs1738252	0.85[CEU][hapmap]
rs3823429	1.00[CEU][hapmap]
rs4452640	1.00[CEU][hapmap]
rs4711561	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7757442	1.00[CEU][hapmap]
rs9380803	1.00[CEU][hapmap];0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv3385303	chr6:38821376-38821837	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38766800-38824400	Weak transcription	K562	blood

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