Variant report

Variant	rs1738251
Chromosome Location	chr6:38749211-38749212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38680060..38681577-chr6:38747521..38749973,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12173602	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1612377	0.92[ASN][1000 genomes]
rs1615744	0.92[ASN][1000 genomes]
rs1678639	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1678642	0.94[ASN][1000 genomes]
rs1678643	0.94[ASN][1000 genomes]
rs1678652	0.96[ASN][1000 genomes]
rs1678653	0.96[ASN][1000 genomes]
rs1678654	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1678655	0.96[ASN][1000 genomes]
rs1678656	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1678658	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1678659	0.96[ASN][1000 genomes]
rs1678662	0.96[ASN][1000 genomes]
rs1678663	0.96[ASN][1000 genomes]
rs1678672	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1678673	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1678677	0.90[ASN][1000 genomes]
rs1678678	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1678679	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1678736	0.90[ASN][1000 genomes]
rs1738174	0.94[ASN][1000 genomes]
rs1738175	0.93[ASN][1000 genomes]
rs1738176	0.92[ASN][1000 genomes]
rs1738178	0.92[ASN][1000 genomes]
rs1738179	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1738180	0.90[ASN][1000 genomes]
rs1738181	0.90[ASN][1000 genomes]
rs1738182	0.90[ASN][1000 genomes]
rs1738183	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1738252	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1738253	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1738254	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1738255	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1738256	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1738259	0.96[ASN][1000 genomes]
rs1738260	0.96[ASN][1000 genomes]
rs1738261	0.96[ASN][1000 genomes]
rs1738262	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1738264	0.96[ASN][1000 genomes]
rs1738265	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1738266	0.96[ASN][1000 genomes]
rs1738267	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1738268	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1738269	0.94[ASN][1000 genomes]
rs2448400	0.90[ASN][1000 genomes]
rs2448401	0.90[ASN][1000 genomes]
rs4714178	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58817640	0.89[ASN][1000 genomes]
rs9357280	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9394532	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830642	chr6:38645056-38800657	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv462915	chr6:38728142-38773293	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv602959	chr6:38728142-38786528	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv470814	chr6:38728142-38790149	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv462916	chr6:38747770-38782401	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv602960	chr6:38747770-38782401	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38749200-38750400	Enhancers	K562	blood

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