Variant report

Variant	rs17384360
Chromosome Location	chr1:161030806-161030807
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161029441..161031995-chr1:161038476..161041448,2	MCF-7	breast:
2	chr1:161017585..161019978-chr1:161027993..161031317,3	MCF-7	breast:
3	chr1:161030433..161032581-chr1:161036169..161038406,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186517	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1044478	0.94[CHB][hapmap]
rs1062826	0.94[CHB][hapmap]
rs1062827	0.94[CHB][hapmap]
rs11801591	1.00[YRI][hapmap]
rs11802727	1.00[YRI][hapmap]
rs11807930	0.94[CHB][hapmap]
rs12078155	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12403334	0.88[CHB][hapmap]
rs12565932	0.94[CHB][hapmap]
rs1556519	1.00[YRI][hapmap]
rs17388108	0.80[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap]
rs2073655	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2073656	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2073658	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2247596	0.94[CHB][hapmap]
rs2247671	0.80[CEU][hapmap];0.89[CHB][hapmap]
rs2247790	0.80[CEU][hapmap];0.94[CHB][hapmap]
rs2297220	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs2297221	0.94[CHB][hapmap]
rs2297222	0.87[CEU][hapmap]
rs2481080	0.80[CEU][hapmap];0.89[CHB][hapmap]
rs2481081	0.80[CEU][hapmap];0.83[CHB][hapmap]
rs2481084	0.94[CHB][hapmap]
rs3737785	0.84[CEU][hapmap];0.89[CHB][hapmap]
rs3737787	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs55728374	0.87[AFR][1000 genomes]
rs60315407	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61801072	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61801073	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs836	0.94[CHB][hapmap]
rs869985	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv3221	chr1:161008175-161052979	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161016400-161037800	Weak transcription	Colonic Mucosa	Colon
2	chr1:161017000-161031600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:161017000-161032200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:161017400-161031000	Strong transcription	Thymus	Thymus
5	chr1:161017600-161034400	Strong transcription	Fetal Thymus	thymus
6	chr1:161018600-161032400	Strong transcription	Primary B cells from cord blood	blood
7	chr1:161018600-161033600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:161021400-161034000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr1:161021600-161033000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr1:161021600-161038400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:161022800-161031800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr1:161024800-161038200	Weak transcription	Lung	lung
13	chr1:161026400-161039600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:161026600-161036600	Weak transcription	Placenta	Placenta
15	chr1:161026800-161035000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr1:161027200-161036200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
17	chr1:161027400-161037800	Weak transcription	Esophagus	oesophagus
18	chr1:161029000-161032400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr1:161029000-161036000	Genic enhancers	Primary T cells fromperipheralblood	blood
20	chr1:161029200-161032400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr1:161029200-161032600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
22	chr1:161029200-161032600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr1:161029200-161036600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr1:161029400-161033000	Genic enhancers	Primary T cells from cord blood	blood
25	chr1:161029800-161031000	Enhancers	GM12878-XiMat	blood
26	chr1:161029800-161031400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr1:161029800-161036200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr1:161029800-161038000	Weak transcription	Stomach Mucosa	stomach
29	chr1:161030000-161031600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr1:161030000-161031800	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr1:161030000-161031800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr1:161030000-161032000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr1:161030000-161032000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr1:161030000-161033400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr1:161030000-161034000	Strong transcription	Primary B cells from peripheral blood	blood
36	chr1:161030000-161034000	Weak transcription	Dnd41	blood
37	chr1:161030000-161036000	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr1:161030000-161036000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr1:161030000-161036800	Weak transcription	Spleen	Spleen
40	chr1:161030000-161046200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr1:161030600-161031000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr1:161030800-161036200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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