Variant report

Variant	rs17386490
Chromosome Location	chr1:85679644-85679645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85665001..85668975-chr1:85676628..85680834,4	K562	blood:
2	chr1:85671412..85673283-chr1:85677641..85680596,2	K562	blood:
3	chr1:85664392..85672702-chr1:85677833..85684054,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000097096	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1674162	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1674175	0.87[EUR][1000 genomes]
rs17124475	0.82[EUR][1000 genomes]
rs17382610	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17386581	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61769452	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61769454	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61771963	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61771964	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61771966	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61771967	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61771968	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61771969	0.83[EUR][1000 genomes]
rs61771970	0.82[EUR][1000 genomes]
rs61771973	0.80[EUR][1000 genomes]
rs817389	0.87[EUR][1000 genomes]
rs817390	0.87[EUR][1000 genomes]
rs817391	0.87[EUR][1000 genomes]
rs817392	0.87[EUR][1000 genomes]
rs817393	0.87[EUR][1000 genomes]
rs817394	0.87[EUR][1000 genomes]
rs817398	0.87[EUR][1000 genomes]
rs817399	0.87[EUR][1000 genomes]
rs817401	0.87[EUR][1000 genomes]
rs817403	0.84[EUR][1000 genomes]
rs817404	0.81[EUR][1000 genomes]
rs817411	0.87[EUR][1000 genomes]
rs817415	0.87[EUR][1000 genomes]
rs817422	0.87[EUR][1000 genomes]
rs817423	0.87[EUR][1000 genomes]
rs817425	0.87[EUR][1000 genomes]
rs817428	0.87[EUR][1000 genomes]
rs817434	0.87[EUR][1000 genomes]
rs817436	0.87[EUR][1000 genomes]
rs817438	0.87[EUR][1000 genomes]
rs817445	0.87[EUR][1000 genomes]
rs817446	0.83[EUR][1000 genomes]
rs817447	0.87[EUR][1000 genomes]
rs817451	0.87[EUR][1000 genomes]
rs817453	0.87[EUR][1000 genomes]
rs817456	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs817457	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs860140	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830459	chr1:85589585-85786311	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85668000-85689000	Weak transcription	Gastric	stomach
2	chr1:85668600-85680800	Weak transcription	K562	blood
3	chr1:85673200-85681200	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:85673800-85690400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:85679400-85680600	Enhancers	Rectal Smooth Muscle	rectum

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